Variant report

Variant	rs56154425
Chromosome Location	chr11:75690221-75690222
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs11821272	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822333	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11825529	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826581	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827501	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1380075	1.00[ASN][1000 genomes]
rs1470235	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1521529	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1521530	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17134493	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134497	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134510	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134532	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17134568	0.91[EUR][1000 genomes]
rs17134571	0.91[EUR][1000 genomes]
rs17134573	0.91[EUR][1000 genomes]
rs17134575	0.91[EUR][1000 genomes]
rs17134576	0.91[EUR][1000 genomes]
rs17134579	0.91[EUR][1000 genomes]
rs2139934	0.91[EUR][1000 genomes]
rs2165673	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56071239	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56117351	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56272311	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56803972	0.91[EUR][1000 genomes]
rs57092805	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57211393	0.91[EUR][1000 genomes]
rs57307347	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57372160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57603155	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57723633	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58402577	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58550963	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58719494	0.82[EUR][1000 genomes]
rs59131065	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59786011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59789333	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60175455	0.82[AMR][1000 genomes]
rs60864005	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61422358	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61624710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592619	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592620	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592624	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592625	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592626	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592627	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7102363	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102772	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7103027	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7103307	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103473	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7104995	0.91[EUR][1000 genomes]
rs7106336	1.00[EUR][1000 genomes]
rs7107438	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107458	1.00[ASN][1000 genomes]
rs7107640	0.91[EUR][1000 genomes]
rs7107716	1.00[EUR][1000 genomes]
rs7108353	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7109579	0.91[EUR][1000 genomes]
rs7110016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110886	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111495	1.00[EUR][1000 genomes]
rs7112734	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115657	1.00[ASN][1000 genomes]
rs7115733	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7121323	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7121876	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7123752	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127326	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7127603	1.00[EUR][1000 genomes]
rs7129228	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7129433	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131447	1.00[EUR][1000 genomes]
rs73493967	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73493995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496123	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496136	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496149	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496171	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496192	0.91[EUR][1000 genomes]
rs73498213	0.91[EUR][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes]
rs7927853	1.00[ASN][1000 genomes]
rs7930216	0.91[EUR][1000 genomes]
rs7933383	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933454	0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7937633	1.00[ASN][1000 genomes]
rs7937889	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7941335	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942870	0.91[EUR][1000 genomes]
rs7942891	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944561	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7947864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948123	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949819	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]
rs9736854	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75658800-75695400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:75667000-75715200	Weak transcription	Left Ventricle	heart
3	chr11:75672200-75694600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:75673000-75714800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:75674400-75694400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:75674400-75694600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:75675800-75700200	Weak transcription	Lung	lung
8	chr11:75678000-75695000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:75678000-75715600	Weak transcription	Aorta	Aorta
10	chr11:75678200-75694400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr11:75679200-75694600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:75679400-75690600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:75679400-75698000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:75679600-75699000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:75679600-75716400	Weak transcription	Hela-S3	cervix
16	chr11:75679800-75694400	Weak transcription	HUVEC	blood vessel
17	chr11:75679800-75697800	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:75681000-75700400	Weak transcription	Small Intestine	intestine
19	chr11:75682200-75694400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:75682200-75715000	Weak transcription	Thymus	Thymus
21	chr11:75682600-75694400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:75683200-75690800	Weak transcription	Fetal Intestine Small	intestine
23	chr11:75684400-75694400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:75684600-75691200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr11:75684600-75692400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:75684600-75694400	Weak transcription	Dnd41	blood
27	chr11:75684600-75694600	Weak transcription	Adipose Nuclei	Adipose
28	chr11:75684800-75691200	Weak transcription	GM12878-XiMat	blood
29	chr11:75684800-75692200	Weak transcription	Primary B cells from cord blood	blood
30	chr11:75684800-75694600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:75685000-75690800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:75685000-75694600	Weak transcription	Liver	Liver
33	chr11:75688000-75694400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:75688800-75694400	Weak transcription	Primary T cells from cord blood	blood
35	chr11:75688800-75694600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:75689000-75715200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:75689200-75716600	Weak transcription	Spleen	Spleen
38	chr11:75689400-75697800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:75689600-75694400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr11:75690000-75697800	Weak transcription	A549	lung
41	chr11:75690200-75690400	ZNF genes & repeats	Fetal Stomach	stomach
42	chr11:75690200-75690600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:75690200-75690600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:75690200-75690600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr11:75690200-75690600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:75690200-75690600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:75690200-75691600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:75690200-75693000	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr11:75690200-75693400	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr11:75690200-75693800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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