Variant report

Variant	rs6592620
Chromosome Location	chr11:75715258-75715259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11821272	1.00[EUR][1000 genomes]
rs11822333	0.91[EUR][1000 genomes]
rs11825311	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap]
rs11825529	0.96[EUR][1000 genomes]
rs11826581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828568	1.00[TSI][hapmap]
rs1380077	0.85[TSI][hapmap]
rs1470235	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	0.91[EUR][1000 genomes]
rs1521530	0.91[EUR][1000 genomes]
rs17134442	1.00[TSI][hapmap]
rs17134493	1.00[EUR][1000 genomes]
rs17134497	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	0.91[EUR][1000 genomes]
rs17134568	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134571	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2099856	1.00[TSI][hapmap]
rs2139934	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5026790	1.00[TSI][hapmap]
rs56117351	1.00[EUR][1000 genomes]
rs56154425	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56272311	0.91[EUR][1000 genomes]
rs56803972	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	0.91[EUR][1000 genomes]
rs57211393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	0.91[EUR][1000 genomes]
rs57372160	1.00[EUR][1000 genomes]
rs57603155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58402577	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58550963	0.96[EUR][1000 genomes]
rs58719494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59786011	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59789333	0.84[EUR][1000 genomes]
rs60175455	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60864005	1.00[EUR][1000 genomes]
rs61422358	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	1.00[EUR][1000 genomes]
rs6592619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592624	0.91[EUR][1000 genomes]
rs6592625	0.91[EUR][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7102363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102772	1.00[EUR][1000 genomes]
rs7103027	0.91[EUR][1000 genomes]
rs7103307	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103473	0.91[EUR][1000 genomes]
rs7104995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107458	1.00[JPT][hapmap]
rs7107640	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107716	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	0.91[EUR][1000 genomes]
rs7109579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110016	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110886	1.00[EUR][1000 genomes]
rs7111495	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114160	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115657	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7115733	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	1.00[ASN][1000 genomes]
rs7120267	1.00[TSI][hapmap]
rs7121323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	0.91[EUR][1000 genomes]
rs7123752	1.00[EUR][1000 genomes]
rs7126845	0.85[TSI][hapmap]
rs7127326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	0.91[EUR][1000 genomes]
rs7129433	0.96[EUR][1000 genomes]
rs7131447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713275	0.85[TSI][hapmap]
rs73493967	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73493979	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493995	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496123	1.00[EUR][1000 genomes]
rs73496136	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496192	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927868	1.00[TSI][hapmap]
rs7930216	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931944	1.00[TSI][hapmap]
rs7933383	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes]
rs7937889	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7941207	1.00[TSI][hapmap]
rs7941335	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942891	1.00[EUR][1000 genomes]
rs7944561	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap]
rs7946566	1.00[CEU][hapmap]
rs7947864	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75678000-75715600	Weak transcription	Aorta	Aorta
2	chr11:75679600-75716400	Weak transcription	Hela-S3	cervix
3	chr11:75689200-75716600	Weak transcription	Spleen	Spleen
4	chr11:75691000-75715600	Weak transcription	Fetal Intestine Small	intestine
5	chr11:75691400-75716600	Weak transcription	Gastric	stomach
6	chr11:75692600-75716000	Weak transcription	Ovary	ovary
7	chr11:75693000-75728200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:75693000-75730000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:75693600-75716600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:75694000-75717200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:75695600-75728000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:75695800-75715400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:75695800-75715600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:75696200-75716600	Weak transcription	HSMM	muscle
15	chr11:75701000-75715800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:75701800-75721800	Weak transcription	Small Intestine	intestine
17	chr11:75701800-75726200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:75706200-75716600	Weak transcription	Esophagus	oesophagus
19	chr11:75707800-75721400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:75708600-75716600	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:75708800-75715600	Weak transcription	Fetal Stomach	stomach
22	chr11:75708800-75727800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:75709200-75745400	Weak transcription	Psoas Muscle	Psoas
24	chr11:75710400-75716400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:75711000-75716600	Weak transcription	Brain Angular Gyrus	brain
26	chr11:75711400-75716600	Weak transcription	NH-A	brain
27	chr11:75711600-75716200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:75711600-75716400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:75711600-75743600	Weak transcription	Pancreas	Pancrea
30	chr11:75711800-75716600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:75712400-75716600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:75712600-75725800	Strong transcription	GM12878-XiMat	blood
33	chr11:75712600-75726200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr11:75712800-75719400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:75712800-75723400	Weak transcription	Brain Anterior Caudate	brain
36	chr11:75712800-75727800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr11:75712800-75731200	Weak transcription	Right Ventricle	heart
38	chr11:75713000-75723600	Weak transcription	Fetal Brain Male	brain
39	chr11:75713200-75716400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:75713200-75716600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:75713200-75728000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:75713200-75728200	Weak transcription	Fetal Kidney	kidney
43	chr11:75713400-75718000	Weak transcription	Fetal Heart	heart
44	chr11:75713600-75716400	Weak transcription	NHEK	skin
45	chr11:75713600-75717600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:75713600-75719400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:75713600-75721800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:75713600-75728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:75713600-75734600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:75713800-75720000	Weak transcription	Brain Germinal Matrix	brain

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