Variant report

Variant	rs7109579
Chromosome Location	chr11:75833980-75833981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs11820084	0.87[EUR][1000 genomes]
rs11821272	0.91[EUR][1000 genomes]
rs11822333	1.00[EUR][1000 genomes]
rs11825311	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs11825529	0.87[EUR][1000 genomes]
rs11826581	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	1.00[ASN][1000 genomes]
rs11828568	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1470235	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	1.00[EUR][1000 genomes]
rs1521530	1.00[EUR][1000 genomes]
rs17134493	0.91[EUR][1000 genomes]
rs17134497	0.91[EUR][1000 genomes]
rs17134510	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134568	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134594	0.83[EUR][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2099856	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2139934	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	0.91[EUR][1000 genomes]
rs35688819	0.80[EUR][1000 genomes]
rs5026790	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs56117351	0.91[EUR][1000 genomes]
rs56154425	0.91[EUR][1000 genomes]
rs56272311	1.00[EUR][1000 genomes]
rs56803972	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	1.00[EUR][1000 genomes]
rs57211393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	1.00[EUR][1000 genomes]
rs57372160	0.91[EUR][1000 genomes]
rs57603155	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58402577	0.91[EUR][1000 genomes]
rs58550963	0.87[EUR][1000 genomes]
rs58719494	1.00[ASN][1000 genomes]
rs59786011	0.91[EUR][1000 genomes]
rs59789333	0.92[EUR][1000 genomes]
rs60175455	1.00[ASN][1000 genomes]
rs60864005	0.91[EUR][1000 genomes]
rs61422358	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	0.91[EUR][1000 genomes]
rs6592619	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592620	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592624	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592625	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102363	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102772	0.91[EUR][1000 genomes]
rs7103027	1.00[EUR][1000 genomes]
rs7103307	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103473	1.00[EUR][1000 genomes]
rs7104995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107716	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110016	0.91[EUR][1000 genomes]
rs7110886	0.91[EUR][1000 genomes]
rs7111495	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112734	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114160	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7114434	1.00[EUR][1000 genomes]
rs7115333	0.91[EUR][1000 genomes]
rs7115657	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs7115733	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121323	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	1.00[EUR][1000 genomes]
rs7123752	0.91[EUR][1000 genomes]
rs7127326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	1.00[EUR][1000 genomes]
rs7129433	0.87[EUR][1000 genomes]
rs7131447	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493967	0.83[EUR][1000 genomes]
rs73493979	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496123	0.91[EUR][1000 genomes]
rs73496136	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	0.91[EUR][1000 genomes]
rs73496192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73498302	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928611	0.87[EUR][1000 genomes]
rs7929964	0.87[EUR][1000 genomes]
rs7930216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933383	0.91[EUR][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7935047	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937889	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7941207	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7941335	0.91[EUR][1000 genomes]
rs7942870	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942891	0.91[EUR][1000 genomes]
rs7944561	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7946566	1.00[CEU][hapmap]
rs7947864	0.91[EUR][1000 genomes]
rs7948123	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	0.91[EUR][1000 genomes]
rs7952260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:75802800-75834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:75820800-75836000	Weak transcription	NHDF-Ad	bronchial
4	chr11:75820800-75842200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr11:75822000-75852200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:75825400-75841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:75825600-75836800	Weak transcription	HSMMtube	muscle
8	chr11:75825600-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:75825800-75852800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
11	chr11:75826800-75840200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:75827200-75851800	Weak transcription	Gastric	stomach
13	chr11:75827400-75851800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:75827400-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:75827600-75834200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:75827600-75841000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:75827600-75851800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:75827600-75851800	Weak transcription	Dnd41	blood
19	chr11:75827800-75842200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:75827800-75849400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:75827800-75851400	Weak transcription	HepG2	liver
22	chr11:75828000-75834000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:75828000-75842200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:75828200-75841800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:75830000-75834000	Enhancers	Brain Hippocampus Middle	brain
26	chr11:75830200-75834600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr11:75830600-75837800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:75830800-75834200	Enhancers	Fetal Kidney	kidney
29	chr11:75830800-75841800	Weak transcription	Primary T cells from cord blood	blood
30	chr11:75831000-75835400	Strong transcription	GM12878-XiMat	blood
31	chr11:75831200-75834000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:75831200-75835600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:75831200-75837400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:75831200-75837800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr11:75831200-75839600	Weak transcription	Pancreas	Pancrea
36	chr11:75831200-75841800	Weak transcription	Aorta	Aorta
37	chr11:75831400-75834800	Strong transcription	Primary B cells from cord blood	blood
38	chr11:75831400-75851800	Weak transcription	Fetal Thymus	thymus
39	chr11:75831600-75834200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr11:75831600-75843800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr11:75831800-75836200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:75831800-75845200	Weak transcription	Liver	Liver
43	chr11:75831800-75851600	Weak transcription	Spleen	Spleen
44	chr11:75832000-75836000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:75832000-75861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:75832200-75835400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:75832200-75836000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:75832200-75837000	Enhancers	Adipose Nuclei	Adipose
49	chr11:75832400-75834000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:75832400-75834000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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