Variant report

Variant	rs73498295
Chromosome Location	chr11:75834642-75834643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs11820084	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11821272	0.91[EUR][1000 genomes]
rs11822333	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11825311	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11825529	0.87[EUR][1000 genomes]
rs11826581	0.91[EUR][1000 genomes]
rs1470235	0.91[EUR][1000 genomes]
rs1521529	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1521530	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17134493	0.91[EUR][1000 genomes]
rs17134497	0.91[EUR][1000 genomes]
rs17134510	0.91[EUR][1000 genomes]
rs17134532	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17134568	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134571	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134573	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134575	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134576	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134579	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134594	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2139934	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2165673	0.91[EUR][1000 genomes]
rs35688819	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56117351	0.91[EUR][1000 genomes]
rs56154425	0.91[EUR][1000 genomes]
rs56272311	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56803972	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57092805	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57211393	1.00[EUR][1000 genomes]
rs57307347	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57372160	0.91[EUR][1000 genomes]
rs57603155	0.91[EUR][1000 genomes]
rs58402577	0.91[EUR][1000 genomes]
rs58550963	0.87[EUR][1000 genomes]
rs59786011	0.91[EUR][1000 genomes]
rs59789333	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60864005	0.91[EUR][1000 genomes]
rs61422358	0.91[EUR][1000 genomes]
rs61624710	0.91[EUR][1000 genomes]
rs6592619	0.91[EUR][1000 genomes]
rs6592620	0.91[EUR][1000 genomes]
rs6592624	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592626	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592627	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7102363	0.91[EUR][1000 genomes]
rs7102772	0.91[EUR][1000 genomes]
rs7103027	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7103307	0.91[EUR][1000 genomes]
rs7103473	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7104995	1.00[EUR][1000 genomes]
rs7106336	0.91[EUR][1000 genomes]
rs7107438	0.91[EUR][1000 genomes]
rs7107640	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107716	0.91[EUR][1000 genomes]
rs7108353	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109579	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110016	0.91[EUR][1000 genomes]
rs7110886	0.91[EUR][1000 genomes]
rs7111495	0.91[EUR][1000 genomes]
rs7112734	0.91[EUR][1000 genomes]
rs7113130	0.91[EUR][1000 genomes]
rs7113414	0.91[EUR][1000 genomes]
rs7114434	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115333	0.91[EUR][1000 genomes]
rs7115733	0.87[EUR][1000 genomes]
rs7117569	0.82[ASN][1000 genomes]
rs7119636	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7121323	0.91[EUR][1000 genomes]
rs7121876	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7123752	0.91[EUR][1000 genomes]
rs7127326	0.91[EUR][1000 genomes]
rs7127603	0.91[EUR][1000 genomes]
rs7129228	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7129433	0.87[EUR][1000 genomes]
rs7131447	0.91[EUR][1000 genomes]
rs73493967	0.83[EUR][1000 genomes]
rs73493979	0.91[EUR][1000 genomes]
rs73493995	0.91[EUR][1000 genomes]
rs73496123	0.91[EUR][1000 genomes]
rs73496136	0.91[EUR][1000 genomes]
rs73496149	0.91[EUR][1000 genomes]
rs73496171	0.91[EUR][1000 genomes]
rs73496192	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73498213	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73498302	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7928611	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7928973	0.87[ASN][1000 genomes]
rs7929964	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7930216	1.00[EUR][1000 genomes]
rs7933383	0.91[EUR][1000 genomes]
rs7933454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7937889	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7941335	0.91[EUR][1000 genomes]
rs7942870	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942891	0.91[EUR][1000 genomes]
rs7944561	0.82[EUR][1000 genomes]
rs7946059	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7946566	0.87[ASN][1000 genomes]
rs7946584	0.87[ASN][1000 genomes]
rs7947864	0.91[EUR][1000 genomes]
rs7948123	0.91[EUR][1000 genomes]
rs7949819	0.91[EUR][1000 genomes]
rs7952260	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:75820800-75836000	Weak transcription	NHDF-Ad	bronchial
3	chr11:75820800-75842200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr11:75822000-75852200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:75825400-75841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:75825600-75836800	Weak transcription	HSMMtube	muscle
7	chr11:75825600-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:75825800-75852800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
10	chr11:75826800-75840200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:75827200-75851800	Weak transcription	Gastric	stomach
12	chr11:75827400-75851800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:75827400-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:75827600-75841000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:75827600-75851800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:75827600-75851800	Weak transcription	Dnd41	blood
17	chr11:75827800-75842200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:75827800-75849400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:75827800-75851400	Weak transcription	HepG2	liver
20	chr11:75828000-75842200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:75828200-75841800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:75830600-75837800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:75830800-75841800	Weak transcription	Primary T cells from cord blood	blood
24	chr11:75831000-75835400	Strong transcription	GM12878-XiMat	blood
25	chr11:75831200-75835600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:75831200-75837400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:75831200-75837800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:75831200-75839600	Weak transcription	Pancreas	Pancrea
29	chr11:75831200-75841800	Weak transcription	Aorta	Aorta
30	chr11:75831400-75834800	Strong transcription	Primary B cells from cord blood	blood
31	chr11:75831400-75851800	Weak transcription	Fetal Thymus	thymus
32	chr11:75831600-75843800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:75831800-75836200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:75831800-75845200	Weak transcription	Liver	Liver
35	chr11:75831800-75851600	Weak transcription	Spleen	Spleen
36	chr11:75832000-75836000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:75832000-75861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:75832200-75835400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:75832200-75836000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:75832200-75837000	Enhancers	Adipose Nuclei	Adipose
41	chr11:75832400-75835200	Enhancers	Fetal Brain Male	brain
42	chr11:75832400-75835400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:75832400-75836800	Enhancers	Fetal Lung	lung
44	chr11:75832400-75841600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:75832400-75842200	Weak transcription	Fetal Intestine Small	intestine
46	chr11:75832400-75852000	Weak transcription	Fetal Intestine Large	intestine
47	chr11:75832600-75835800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:75832600-75835800	Weak transcription	NHLF	lung
49	chr11:75832600-75836000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:75832600-75836000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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