Variant report

Variant	rs7107716
Chromosome Location	chr11:75740314-75740315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75732017..75733519-chr11:75738631..75741494,2	K562	blood:

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs11821272	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822333	0.91[EUR][1000 genomes]
rs11825311	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11825529	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11826581	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828568	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1380077	0.82[GIH][hapmap];0.85[TSI][hapmap]
rs1470235	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	0.91[EUR][1000 genomes]
rs1521530	0.91[EUR][1000 genomes]
rs17134442	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs17134493	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134497	1.00[EUR][1000 genomes]
rs17134510	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	0.91[EUR][1000 genomes]
rs17134568	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134571	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2099856	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2139934	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5026790	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs56071239	0.80[AMR][1000 genomes]
rs56117351	1.00[EUR][1000 genomes]
rs56154425	1.00[EUR][1000 genomes]
rs56272311	0.91[EUR][1000 genomes]
rs56803972	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	0.91[EUR][1000 genomes]
rs57211393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	0.91[EUR][1000 genomes]
rs57372160	1.00[EUR][1000 genomes]
rs57603155	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723633	0.89[AMR][1000 genomes]
rs58402577	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58550963	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58719494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59131065	0.80[AMR][1000 genomes]
rs59786011	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59789333	0.84[EUR][1000 genomes]
rs60175455	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60864005	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61422358	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	1.00[EUR][1000 genomes]
rs6592619	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592620	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592624	0.91[EUR][1000 genomes]
rs6592625	0.91[EUR][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7102363	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102772	1.00[EUR][1000 genomes]
rs7103027	0.91[EUR][1000 genomes]
rs7103307	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103473	0.91[EUR][1000 genomes]
rs7104995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107458	1.00[JPT][hapmap]
rs7107640	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	0.91[EUR][1000 genomes]
rs7109579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110016	1.00[EUR][1000 genomes]
rs7110886	1.00[EUR][1000 genomes]
rs7111495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112734	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114160	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115657	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs7115733	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	1.00[ASN][1000 genomes]
rs7120267	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7121323	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	0.91[EUR][1000 genomes]
rs7123752	1.00[EUR][1000 genomes]
rs7126845	0.85[TSI][hapmap]
rs7127326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	0.91[EUR][1000 genomes]
rs7129433	0.96[EUR][1000 genomes]
rs7131447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713275	0.82[GIH][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs73493967	0.91[EUR][1000 genomes]
rs73493979	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496123	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496136	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496192	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927868	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7930216	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931944	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7933383	1.00[EUR][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes]
rs7937889	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7941207	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7941335	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942891	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944561	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7946566	1.00[CEU][hapmap]
rs7947864	1.00[EUR][1000 genomes]
rs7948123	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75709200-75745400	Weak transcription	Psoas Muscle	Psoas
2	chr11:75711600-75743600	Weak transcription	Pancreas	Pancrea
3	chr11:75716800-75778200	Weak transcription	Ovary	ovary
4	chr11:75717000-75741200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:75717200-75741400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:75717800-75741200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:75718400-75746400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:75718400-75755200	Weak transcription	Esophagus	oesophagus
9	chr11:75719400-75755000	Weak transcription	Left Ventricle	heart
10	chr11:75720000-75757600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:75724800-75743600	Weak transcription	Aorta	Aorta
12	chr11:75728800-75741400	Weak transcription	Hela-S3	cervix
13	chr11:75728800-75742600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr11:75728800-75757400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:75729000-75759600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:75729400-75758200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:75731200-75759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:75731400-75758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:75731400-75758400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:75731600-75743600	Weak transcription	Gastric	stomach
21	chr11:75731600-75755000	Weak transcription	Right Ventricle	heart
22	chr11:75731600-75771800	Weak transcription	Lung	lung
23	chr11:75731800-75759000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:75732000-75740400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:75732200-75748400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:75732200-75748400	Weak transcription	Fetal Thymus	thymus
27	chr11:75732200-75755400	Weak transcription	Spleen	Spleen
28	chr11:75732200-75758200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:75732200-75771400	Weak transcription	Fetal Intestine Large	intestine
30	chr11:75732400-75741400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:75732400-75755200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr11:75732400-75757200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr11:75733000-75759800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:75733000-75762800	Weak transcription	HepG2	liver
35	chr11:75734600-75755200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:75734600-75760000	Weak transcription	Thymus	Thymus
37	chr11:75734800-75743600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:75735400-75741200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:75735600-75741400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:75736400-75741600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:75736400-75748400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:75736400-75755000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:75736600-75741600	Weak transcription	Adipose Nuclei	Adipose
44	chr11:75736600-75741600	Weak transcription	Brain Anterior Caudate	brain
45	chr11:75736600-75742000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:75736600-75771400	Weak transcription	Fetal Stomach	stomach
47	chr11:75736800-75741600	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:75736800-75742000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:75736800-75751800	Weak transcription	Primary T cells from cord blood	blood
50	chr11:75736800-75777000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links