Variant report

Variant	rs7123752
Chromosome Location	chr11:75788221-75788222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75785629..75788813-chr11:75789909..75792766,3	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs11821272	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11822333	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11825529	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11826581	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827501	0.82[EUR][1000 genomes]
rs1380075	0.95[ASN][1000 genomes]
rs1470235	1.00[EUR][1000 genomes]
rs1521529	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1521530	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17134493	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17134497	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17134510	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134532	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17134568	0.91[EUR][1000 genomes]
rs17134571	0.91[EUR][1000 genomes]
rs17134573	0.91[EUR][1000 genomes]
rs17134575	0.91[EUR][1000 genomes]
rs17134576	0.91[EUR][1000 genomes]
rs17134579	0.91[EUR][1000 genomes]
rs2139934	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2165673	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56071239	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56117351	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56154425	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56272311	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56803972	0.91[EUR][1000 genomes]
rs57092805	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57211393	0.91[EUR][1000 genomes]
rs57307347	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57372160	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57603155	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57723633	0.95[ASN][1000 genomes]
rs58402577	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58550963	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58719494	0.82[EUR][1000 genomes]
rs59131065	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59786011	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59789333	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60864005	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61422358	1.00[EUR][1000 genomes]
rs61624710	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592619	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592620	1.00[EUR][1000 genomes]
rs6592624	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592625	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592626	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592627	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7102363	1.00[EUR][1000 genomes]
rs7102772	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7103027	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7103307	1.00[EUR][1000 genomes]
rs7103473	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7104995	0.91[EUR][1000 genomes]
rs7106336	1.00[EUR][1000 genomes]
rs7107438	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107458	0.95[ASN][1000 genomes]
rs7107640	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7107716	1.00[EUR][1000 genomes]
rs7108353	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109579	0.91[EUR][1000 genomes]
rs7110016	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110886	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111495	1.00[EUR][1000 genomes]
rs7112734	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113130	1.00[EUR][1000 genomes]
rs7113414	1.00[EUR][1000 genomes]
rs7114434	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7115333	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7115657	0.95[ASN][1000 genomes]
rs7115733	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7117569	0.83[ASN][1000 genomes]
rs7121323	1.00[EUR][1000 genomes]
rs7121876	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7127326	1.00[EUR][1000 genomes]
rs7127603	1.00[EUR][1000 genomes]
rs7129228	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7129433	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7131447	1.00[EUR][1000 genomes]
rs73493967	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73493979	1.00[EUR][1000 genomes]
rs73493995	1.00[EUR][1000 genomes]
rs73496123	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73496136	1.00[EUR][1000 genomes]
rs73496149	1.00[EUR][1000 genomes]
rs73496171	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73496192	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73498213	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes]
rs7927853	0.95[ASN][1000 genomes]
rs7930216	0.91[EUR][1000 genomes]
rs7933383	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7933454	0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7937633	0.95[ASN][1000 genomes]
rs7937889	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7941335	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7942870	0.91[EUR][1000 genomes]
rs7942891	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7944561	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7947864	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7948123	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949819	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]
rs9736854	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75744000-75803200	Weak transcription	Aorta	Aorta
2	chr11:75748800-75794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:75760600-75788400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:75764400-75788400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:75764400-75807400	Weak transcription	NHEK	skin
6	chr11:75770800-75788400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:75770800-75796800	Weak transcription	Psoas Muscle	Psoas
8	chr11:75771400-75788600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:75771800-75827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:75774400-75794400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:75775200-75794600	Weak transcription	Hela-S3	cervix
12	chr11:75775600-75788600	Weak transcription	Brain Anterior Caudate	brain
13	chr11:75778600-75788600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:75778600-75794600	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:75778800-75801000	Weak transcription	Fetal Intestine Small	intestine
16	chr11:75779200-75788400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr11:75779200-75799000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:75779400-75788600	Weak transcription	Liver	Liver
19	chr11:75779400-75796400	Weak transcription	Primary T cells from cord blood	blood
20	chr11:75779400-75798800	Weak transcription	Placenta	Placenta
21	chr11:75779400-75801400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:75779400-75813600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:75779400-75827000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:75779600-75813800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:75779800-75788400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:75779800-75826600	Weak transcription	Fetal Thymus	thymus
27	chr11:75780400-75794600	Weak transcription	Fetal Intestine Large	intestine
28	chr11:75780400-75801000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:75780400-75827000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:75781000-75794200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:75781000-75801200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:75781400-75788400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:75781400-75792000	Weak transcription	Dnd41	blood
34	chr11:75781400-75799000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:75781800-75791200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:75785800-75788400	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:75785800-75789400	Enhancers	NHDF-Ad	bronchial
38	chr11:75785800-75827200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:75786000-75788400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:75786000-75788600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:75786200-75788400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:75786200-75788400	Weak transcription	HSMM	muscle
43	chr11:75786200-75788400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr11:75786200-75788400	Weak transcription	NH-A	brain
45	chr11:75786200-75788600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:75786200-75788600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr11:75786200-75788600	Weak transcription	Fetal Heart	heart
48	chr11:75786200-75794000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:75786200-75794600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:75786200-75796200	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links