Variant report

Variant	rs7941335
Chromosome Location	chr11:75757892-75757893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75751052..75753833-chr11:75757773..75759280,2	MCF-7	breast:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11821272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822333	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11825311	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11825529	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826581	1.00[EUR][1000 genomes]
rs11827501	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11828568	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs1380075	1.00[ASN][1000 genomes]
rs1380077	0.82[GIH][hapmap];0.85[TSI][hapmap]
rs1470235	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1521529	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1521530	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17134442	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs17134493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134510	1.00[EUR][1000 genomes]
rs17134532	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17134568	0.91[EUR][1000 genomes]
rs17134571	0.91[EUR][1000 genomes]
rs17134573	0.91[EUR][1000 genomes]
rs17134575	0.91[EUR][1000 genomes]
rs17134576	0.91[EUR][1000 genomes]
rs17134579	0.91[EUR][1000 genomes]
rs2099856	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs2139934	0.91[EUR][1000 genomes]
rs2165673	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5026790	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs56071239	1.00[ASN][1000 genomes]
rs56117351	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56154425	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56272311	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56803972	0.91[EUR][1000 genomes]
rs57092805	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57211393	0.91[EUR][1000 genomes]
rs57307347	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57372160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57603155	1.00[EUR][1000 genomes]
rs57723633	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58402577	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58550963	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58719494	0.82[EUR][1000 genomes]
rs59131065	1.00[ASN][1000 genomes]
rs59786011	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59789333	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60175455	0.87[AMR][1000 genomes]
rs60864005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61422358	1.00[EUR][1000 genomes]
rs61624710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592619	1.00[EUR][1000 genomes]
rs6592620	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592624	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592625	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7102363	1.00[EUR][1000 genomes]
rs7102772	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7103027	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7103307	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103473	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7104995	0.91[EUR][1000 genomes]
rs7106336	1.00[EUR][1000 genomes]
rs7107438	1.00[EUR][1000 genomes]
rs7107458	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7107640	0.91[EUR][1000 genomes]
rs7107716	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7108353	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7109579	0.91[EUR][1000 genomes]
rs7110016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110886	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111495	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112734	1.00[EUR][1000 genomes]
rs7113130	1.00[EUR][1000 genomes]
rs7113414	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114160	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115657	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7115733	0.96[EUR][1000 genomes]
rs7120267	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7121323	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7121876	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7123752	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7126845	0.85[TSI][hapmap]
rs7127326	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7127603	1.00[EUR][1000 genomes]
rs7129228	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7129433	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131447	1.00[EUR][1000 genomes]
rs713275	0.82[GIH][hapmap];0.85[TSI][hapmap]
rs73493967	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493979	1.00[EUR][1000 genomes]
rs73493995	1.00[EUR][1000 genomes]
rs73496123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496136	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496149	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496171	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496192	0.91[EUR][1000 genomes]
rs73498213	0.91[EUR][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes]
rs7927853	1.00[ASN][1000 genomes]
rs7927868	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7930216	0.91[EUR][1000 genomes]
rs7931944	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7933383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7937633	1.00[ASN][1000 genomes]
rs7937889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7941207	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7942870	0.91[EUR][1000 genomes]
rs7942891	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944561	0.91[EUR][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7946566	1.00[CEU][hapmap]
rs7947864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948123	1.00[EUR][1000 genomes]
rs7949819	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]
rs9736854	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75716800-75778200	Weak transcription	Ovary	ovary
2	chr11:75729000-75759600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:75729400-75758200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:75731200-75759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:75731400-75758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:75731400-75758400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:75731600-75771800	Weak transcription	Lung	lung
8	chr11:75731800-75759000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:75732200-75758200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:75732200-75771400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:75733000-75759800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:75733000-75762800	Weak transcription	HepG2	liver
13	chr11:75734600-75760000	Weak transcription	Thymus	Thymus
14	chr11:75736600-75771400	Weak transcription	Fetal Stomach	stomach
15	chr11:75736800-75777000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:75737000-75758200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:75740200-75776600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:75740200-75779000	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:75740400-75759200	Weak transcription	Fetal Intestine Small	intestine
20	chr11:75740400-75772600	Weak transcription	Liver	Liver
21	chr11:75741600-75758000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:75742400-75758000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:75742400-75759800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:75742400-75784800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:75742400-75785400	Weak transcription	Brain Angular Gyrus	brain
26	chr11:75743000-75784800	Weak transcription	Brain Substantia Nigra	brain
27	chr11:75744000-75758200	Weak transcription	Stomach Mucosa	stomach
28	chr11:75744000-75763000	Weak transcription	Gastric	stomach
29	chr11:75744000-75803200	Weak transcription	Aorta	Aorta
30	chr11:75746400-75758200	Weak transcription	Right Atrium	heart
31	chr11:75748800-75780800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:75748800-75794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:75749000-75759800	Weak transcription	Fetal Thymus	thymus
34	chr11:75752000-75759200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:75754200-75758200	Weak transcription	Adipose Nuclei	Adipose
36	chr11:75754600-75758800	Strong transcription	Primary B cells from cord blood	blood
37	chr11:75755200-75759800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr11:75755400-75779200	Weak transcription	Right Ventricle	heart
39	chr11:75755800-75759200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:75755800-75759800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:75755800-75761600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
42	chr11:75755800-75776800	Weak transcription	Left Ventricle	heart
43	chr11:75756000-75772600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:75756200-75758200	Weak transcription	Pancreas	Pancrea
45	chr11:75756400-75758400	Weak transcription	Primary T cells from cord blood	blood
46	chr11:75756400-75759600	Weak transcription	Fetal Lung	lung
47	chr11:75756400-75759800	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr11:75756800-75758400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr11:75757000-75758200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:75757200-75759000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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