Variant report

Variant	rs7102363
Chromosome Location	chr11:75695542-75695543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75694721..75696566-chr11:75699250..75701587,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs11821272	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822333	0.91[EUR][1000 genomes]
rs11825529	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11826581	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	0.91[EUR][1000 genomes]
rs1521530	0.91[EUR][1000 genomes]
rs17134493	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134497	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134510	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	0.91[EUR][1000 genomes]
rs17134568	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134571	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2139934	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	1.00[EUR][1000 genomes]
rs56071239	0.95[AMR][1000 genomes]
rs56117351	1.00[EUR][1000 genomes]
rs56154425	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56272311	0.91[EUR][1000 genomes]
rs56803972	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	0.91[EUR][1000 genomes]
rs57211393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	0.91[EUR][1000 genomes]
rs57372160	1.00[EUR][1000 genomes]
rs57603155	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723633	0.95[AMR][1000 genomes]
rs58402577	1.00[EUR][1000 genomes]
rs58550963	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58719494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59131065	0.95[AMR][1000 genomes]
rs59786011	1.00[EUR][1000 genomes]
rs59789333	0.84[EUR][1000 genomes]
rs60175455	1.00[ASN][1000 genomes]
rs60864005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61422358	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	1.00[EUR][1000 genomes]
rs6592619	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592624	0.91[EUR][1000 genomes]
rs6592625	0.91[EUR][1000 genomes]
rs6592626	0.91[EUR][1000 genomes]
rs6592627	0.91[EUR][1000 genomes]
rs7102772	1.00[EUR][1000 genomes]
rs7103027	0.91[EUR][1000 genomes]
rs7103307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103473	0.91[EUR][1000 genomes]
rs7104995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107640	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107716	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	0.91[EUR][1000 genomes]
rs7109579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110016	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110886	1.00[EUR][1000 genomes]
rs7111495	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112734	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	1.00[EUR][1000 genomes]
rs7115733	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	1.00[ASN][1000 genomes]
rs7121323	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	0.91[EUR][1000 genomes]
rs7123752	1.00[EUR][1000 genomes]
rs7127326	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	0.91[EUR][1000 genomes]
rs7129433	0.96[EUR][1000 genomes]
rs7131447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493967	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73493979	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493995	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496123	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	1.00[EUR][1000 genomes]
rs73496192	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930216	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933383	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933454	0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes]
rs7937889	0.91[EUR][1000 genomes]
rs7941335	1.00[EUR][1000 genomes]
rs7942870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942891	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944561	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947864	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948123	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	1.00[EUR][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]
rs9736854	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75667000-75715200	Weak transcription	Left Ventricle	heart
2	chr11:75673000-75714800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:75675800-75700200	Weak transcription	Lung	lung
4	chr11:75678000-75715600	Weak transcription	Aorta	Aorta
5	chr11:75679400-75698000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:75679600-75699000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:75679600-75716400	Weak transcription	Hela-S3	cervix
8	chr11:75679800-75697800	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:75681000-75700400	Weak transcription	Small Intestine	intestine
10	chr11:75682200-75715000	Weak transcription	Thymus	Thymus
11	chr11:75689000-75715200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:75689200-75716600	Weak transcription	Spleen	Spleen
13	chr11:75689400-75697800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:75690000-75697800	Weak transcription	A549	lung
15	chr11:75690400-75704200	Weak transcription	Fetal Stomach	stomach
16	chr11:75691000-75698800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:75691000-75704200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:75691000-75715600	Weak transcription	Fetal Intestine Small	intestine
19	chr11:75691400-75697000	Weak transcription	Fetal Brain Female	brain
20	chr11:75691400-75700800	Weak transcription	Fetal Brain Male	brain
21	chr11:75691400-75716600	Weak transcription	Gastric	stomach
22	chr11:75691600-75696200	Weak transcription	Brain Germinal Matrix	brain
23	chr11:75691600-75697200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:75691600-75701800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:75692200-75697400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:75692400-75702400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr11:75692600-75716000	Weak transcription	Ovary	ovary
28	chr11:75693000-75715000	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:75693000-75728200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:75693000-75730000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:75693200-75700400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:75693200-75700800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:75693200-75711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:75693200-75715000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:75693400-75697200	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:75693400-75702000	Weak transcription	Brain Angular Gyrus	brain
37	chr11:75693400-75708200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:75693600-75696600	Weak transcription	Osteobl	bone
39	chr11:75693600-75697000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr11:75693600-75697000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:75693600-75700800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:75693600-75716600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:75693800-75700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:75693800-75708200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:75693800-75708800	Weak transcription	Psoas Muscle	Psoas
46	chr11:75693800-75714800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:75693800-75715000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:75694000-75717200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:75694200-75696000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr11:75694400-75695600	Strong transcription	Duodenum Mucosa	Duodenum

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