Variant report

Variant	rs6592619
Chromosome Location	chr11:75714911-75714912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs11821272	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822333	0.91[EUR][1000 genomes]
rs11825311	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11825529	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11826581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828568	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1380077	0.82[GIH][hapmap];0.85[TSI][hapmap]
rs1470235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	0.91[EUR][1000 genomes]
rs1521530	0.91[EUR][1000 genomes]
rs17134442	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs17134493	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134497	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	0.91[EUR][1000 genomes]
rs17134568	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134571	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2099856	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2139934	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	1.00[EUR][1000 genomes]
rs5026790	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs56071239	1.00[AMR][1000 genomes]
rs56117351	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56154425	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56272311	0.91[EUR][1000 genomes]
rs56803972	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	0.91[EUR][1000 genomes]
rs57211393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	0.91[EUR][1000 genomes]
rs57372160	1.00[EUR][1000 genomes]
rs57603155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723633	0.90[AMR][1000 genomes]
rs58402577	1.00[EUR][1000 genomes]
rs58550963	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58719494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59131065	1.00[AMR][1000 genomes]
rs59786011	1.00[EUR][1000 genomes]
rs59789333	0.84[EUR][1000 genomes]
rs60175455	1.00[ASN][1000 genomes]
rs60864005	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61422358	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	1.00[EUR][1000 genomes]
rs6592620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592624	0.91[EUR][1000 genomes]
rs6592625	0.91[EUR][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7102363	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102772	1.00[EUR][1000 genomes]
rs7103027	0.91[EUR][1000 genomes]
rs7103307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103473	0.91[EUR][1000 genomes]
rs7104995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107458	1.00[JPT][hapmap]
rs7107640	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107716	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	0.91[EUR][1000 genomes]
rs7109579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110016	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110886	1.00[EUR][1000 genomes]
rs7111495	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114160	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	1.00[EUR][1000 genomes]
rs7115657	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs7115733	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	1.00[ASN][1000 genomes]
rs7120267	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7121323	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	0.91[EUR][1000 genomes]
rs7123752	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126845	0.85[TSI][hapmap]
rs7127326	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	0.91[EUR][1000 genomes]
rs7129433	0.96[EUR][1000 genomes]
rs7131447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713275	0.82[GIH][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs73493967	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73493979	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493995	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	1.00[EUR][1000 genomes]
rs73496192	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927868	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7930216	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931944	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7933383	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes]
rs7937889	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7941207	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7941335	1.00[EUR][1000 genomes]
rs7942870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944561	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7946566	1.00[CEU][hapmap]
rs7947864	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	1.00[EUR][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]
rs9736854	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75667000-75715200	Weak transcription	Left Ventricle	heart
2	chr11:75678000-75715600	Weak transcription	Aorta	Aorta
3	chr11:75679600-75716400	Weak transcription	Hela-S3	cervix
4	chr11:75682200-75715000	Weak transcription	Thymus	Thymus
5	chr11:75689000-75715200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:75689200-75716600	Weak transcription	Spleen	Spleen
7	chr11:75691000-75715600	Weak transcription	Fetal Intestine Small	intestine
8	chr11:75691400-75716600	Weak transcription	Gastric	stomach
9	chr11:75692600-75716000	Weak transcription	Ovary	ovary
10	chr11:75693000-75715000	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:75693000-75728200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:75693000-75730000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:75693200-75715000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:75693600-75716600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:75693800-75715000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:75694000-75717200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:75694400-75715000	Weak transcription	Fetal Intestine Large	intestine
18	chr11:75695600-75715000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:75695600-75715200	Weak transcription	K562	blood
20	chr11:75695600-75728000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:75695800-75715000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:75695800-75715400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:75695800-75715600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:75696000-75715000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:75696200-75715000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:75696200-75716600	Weak transcription	HSMM	muscle
27	chr11:75700400-75715200	Weak transcription	Lung	lung
28	chr11:75701000-75715000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:75701000-75715200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr11:75701000-75715800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:75701800-75715000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:75701800-75721800	Weak transcription	Small Intestine	intestine
33	chr11:75701800-75726200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:75706200-75716600	Weak transcription	Esophagus	oesophagus
35	chr11:75707600-75715000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:75707800-75715000	Weak transcription	HUVEC	blood vessel
37	chr11:75707800-75721400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:75708400-75715000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:75708600-75716600	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:75708800-75715600	Weak transcription	Fetal Stomach	stomach
41	chr11:75708800-75727800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:75709000-75715000	Weak transcription	Adipose Nuclei	Adipose
43	chr11:75709000-75715000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:75709200-75745400	Weak transcription	Psoas Muscle	Psoas
45	chr11:75710400-75715000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:75710400-75716400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:75711000-75716600	Weak transcription	Brain Angular Gyrus	brain
48	chr11:75711400-75716600	Weak transcription	NH-A	brain
49	chr11:75711600-75715000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:75711600-75715000	Weak transcription	Fetal Thymus	thymus

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