Variant report

Variant	rs7103307
Chromosome Location	chr11:75778107-75778108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75776976..75780489-chr11:75783161..75785961,4	K562	blood:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs11821272	1.00[EUR][1000 genomes]
rs11822333	0.91[EUR][1000 genomes]
rs11825311	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11825529	0.96[EUR][1000 genomes]
rs11826581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828568	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs1380077	0.82[GIH][hapmap];0.85[TSI][hapmap]
rs1470235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	0.91[EUR][1000 genomes]
rs1521530	0.91[EUR][1000 genomes]
rs17134442	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs17134493	1.00[EUR][1000 genomes]
rs17134497	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	0.91[EUR][1000 genomes]
rs17134568	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134571	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2099856	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs2139934	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5026790	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs56117351	1.00[EUR][1000 genomes]
rs56154425	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56272311	0.91[EUR][1000 genomes]
rs56803972	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	0.91[EUR][1000 genomes]
rs57211393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	0.91[EUR][1000 genomes]
rs57372160	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57603155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58402577	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58550963	0.96[EUR][1000 genomes]
rs58719494	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59786011	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59789333	0.84[EUR][1000 genomes]
rs60175455	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60864005	1.00[EUR][1000 genomes]
rs61422358	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592620	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592624	0.91[EUR][1000 genomes]
rs6592625	0.91[EUR][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7102363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102772	1.00[EUR][1000 genomes]
rs7103027	0.91[EUR][1000 genomes]
rs7103473	0.91[EUR][1000 genomes]
rs7104995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107458	1.00[JPT][hapmap]
rs7107640	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107716	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	0.91[EUR][1000 genomes]
rs7109579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110016	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110886	1.00[EUR][1000 genomes]
rs7111495	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114160	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115657	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs7115733	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	1.00[ASN][1000 genomes]
rs7120267	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7121323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	0.91[EUR][1000 genomes]
rs7123752	1.00[EUR][1000 genomes]
rs7126845	0.85[TSI][hapmap]
rs7127326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	0.91[EUR][1000 genomes]
rs7129433	0.96[EUR][1000 genomes]
rs7131447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493967	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73493979	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493995	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496123	1.00[EUR][1000 genomes]
rs73496136	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496192	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927868	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7930216	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931944	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7933383	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes]
rs7937889	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7941207	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7941335	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942891	1.00[EUR][1000 genomes]
rs7944561	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7946566	1.00[CEU][hapmap]
rs7947864	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75716800-75778200	Weak transcription	Ovary	ovary
2	chr11:75740200-75779000	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:75742400-75784800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:75742400-75785400	Weak transcription	Brain Angular Gyrus	brain
5	chr11:75743000-75784800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:75744000-75803200	Weak transcription	Aorta	Aorta
7	chr11:75748800-75780800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:75748800-75794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:75755400-75779200	Weak transcription	Right Ventricle	heart
10	chr11:75759400-75778200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:75760400-75784800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:75760600-75788400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:75760800-75785200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:75761000-75778200	Weak transcription	Thymus	Thymus
15	chr11:75761000-75784200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:75761200-75778200	Weak transcription	Spleen	Spleen
17	chr11:75761200-75780000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:75761200-75780200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:75762800-75782400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:75763400-75778200	Weak transcription	HepG2	liver
21	chr11:75763600-75778200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:75763600-75780200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:75763600-75784200	Weak transcription	Gastric	stomach
24	chr11:75764400-75788400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:75764400-75807400	Weak transcription	NHEK	skin
26	chr11:75764800-75778800	Weak transcription	HSMMtube	muscle
27	chr11:75765400-75784400	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:75768600-75778800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:75768800-75778800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:75768800-75781600	Weak transcription	Esophagus	oesophagus
31	chr11:75770000-75785200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:75770400-75780000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:75770400-75784200	Weak transcription	NHLF	lung
34	chr11:75770800-75788400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:75770800-75796800	Weak transcription	Psoas Muscle	Psoas
36	chr11:75771000-75784600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:75771200-75784800	Weak transcription	NH-A	brain
38	chr11:75771200-75785400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:75771400-75788600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:75771800-75827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:75772800-75783600	Weak transcription	Brain Germinal Matrix	brain
42	chr11:75773200-75778200	Weak transcription	Fetal Stomach	stomach
43	chr11:75773200-75778200	Weak transcription	Lung	lung
44	chr11:75774200-75781400	Strong transcription	Primary B cells from cord blood	blood
45	chr11:75774400-75778200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:75774400-75794400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:75775200-75778400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:75775200-75781200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr11:75775200-75784400	Weak transcription	Osteobl	bone
50	chr11:75775200-75794600	Weak transcription	Hela-S3	cervix

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