Variant report

Variant	rs7942870
Chromosome Location	chr11:75828683-75828684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs11820084	0.87[EUR][1000 genomes]
rs11821272	0.91[EUR][1000 genomes]
rs11822333	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825311	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs11825529	0.87[EUR][1000 genomes]
rs11826581	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	1.00[ASN][1000 genomes]
rs11828568	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1470235	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1521530	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134493	0.91[EUR][1000 genomes]
rs17134497	0.91[EUR][1000 genomes]
rs17134510	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	1.00[EUR][1000 genomes]
rs17134568	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134571	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134594	0.83[EUR][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2099856	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2139934	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	0.91[EUR][1000 genomes]
rs35688819	0.80[EUR][1000 genomes]
rs5026790	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs56117351	0.91[EUR][1000 genomes]
rs56154425	0.91[EUR][1000 genomes]
rs56272311	1.00[EUR][1000 genomes]
rs56803972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57211393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57372160	0.91[EUR][1000 genomes]
rs57603155	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58402577	0.91[EUR][1000 genomes]
rs58550963	0.87[EUR][1000 genomes]
rs58719494	1.00[ASN][1000 genomes]
rs59786011	0.91[EUR][1000 genomes]
rs59789333	0.92[EUR][1000 genomes]
rs60175455	1.00[ASN][1000 genomes]
rs60864005	0.91[EUR][1000 genomes]
rs61422358	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	0.91[EUR][1000 genomes]
rs6592619	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592620	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592621	0.82[LWK][hapmap]
rs6592624	1.00[EUR][1000 genomes]
rs6592625	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102363	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102772	0.91[EUR][1000 genomes]
rs7103027	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103307	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103473	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107640	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107716	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	1.00[EUR][1000 genomes]
rs7109579	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110016	0.91[EUR][1000 genomes]
rs7110886	0.91[EUR][1000 genomes]
rs7111495	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112734	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114160	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7114434	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115333	0.91[EUR][1000 genomes]
rs7115657	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs7115733	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120267	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7121323	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123752	0.91[EUR][1000 genomes]
rs7127326	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7129433	0.87[EUR][1000 genomes]
rs7131447	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493967	0.83[EUR][1000 genomes]
rs73493979	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496123	0.91[EUR][1000 genomes]
rs73496136	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	0.91[EUR][1000 genomes]
rs73496192	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73498302	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928611	0.87[EUR][1000 genomes]
rs7929964	0.87[EUR][1000 genomes]
rs7930216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933383	0.91[EUR][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7935047	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937889	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7941207	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7941335	0.91[EUR][1000 genomes]
rs7942891	0.91[EUR][1000 genomes]
rs7944561	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7946566	1.00[CEU][hapmap]
rs7947864	0.91[EUR][1000 genomes]
rs7948123	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	0.91[EUR][1000 genomes]
rs7952260	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:75795000-75830000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:75802800-75834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:75814000-75830200	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:75814200-75830200	Weak transcription	Right Ventricle	heart
6	chr11:75814400-75830800	Weak transcription	Ovary	ovary
7	chr11:75814400-75831000	Weak transcription	Fetal Heart	heart
8	chr11:75815800-75830400	Weak transcription	Fetal Brain Male	brain
9	chr11:75816000-75830800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:75818400-75829800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:75819400-75831600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:75820400-75830600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:75820400-75830600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:75820800-75830600	Weak transcription	Aorta	Aorta
15	chr11:75820800-75830800	Weak transcription	Brain Anterior Caudate	brain
16	chr11:75820800-75836000	Weak transcription	NHDF-Ad	bronchial
17	chr11:75820800-75842200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:75822000-75852200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:75822600-75830600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:75823000-75830600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:75823200-75830600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:75823600-75830400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:75823800-75830600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:75824600-75830800	Weak transcription	Brain Angular Gyrus	brain
25	chr11:75824800-75830200	Weak transcription	Psoas Muscle	Psoas
26	chr11:75825400-75830200	Weak transcription	Small Intestine	intestine
27	chr11:75825400-75830600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:75825400-75830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:75825400-75831400	Weak transcription	NH-A	brain
30	chr11:75825400-75832800	Weak transcription	Thymus	Thymus
31	chr11:75825400-75841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:75825600-75830200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:75825600-75831000	Weak transcription	Brain Germinal Matrix	brain
34	chr11:75825600-75836800	Weak transcription	HSMMtube	muscle
35	chr11:75825600-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:75825800-75830800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:75825800-75852800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:75826000-75829000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
40	chr11:75826200-75829000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:75826400-75829200	Genic enhancers	Primary B cells from peripheral blood	blood
42	chr11:75826400-75830200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:75826600-75829000	Strong transcription	Primary B cells from cord blood	blood
44	chr11:75826600-75829800	Weak transcription	Fetal Lung	lung
45	chr11:75826600-75830400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:75826800-75830200	Weak transcription	Colonic Mucosa	Colon
47	chr11:75826800-75840200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:75827000-75828800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:75827000-75829000	Strong transcription	Left Ventricle	heart
50	chr11:75827000-75829400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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