Variant report

Variant	rs6592621
Chromosome Location	chr11:75733418-75733419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75732017..75733519-chr11:75738631..75741494,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11236597	0.80[ASN][1000 genomes]
rs11825529	0.80[AFR][1000 genomes]
rs12221774	0.82[CEU][hapmap]
rs58497852	0.94[ASN][1000 genomes]
rs6592618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592622	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66918243	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7111334	1.00[MEX][hapmap]
rs7114396	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7116263	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72999583	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73496143	0.83[ASN][1000 genomes]
rs7926198	0.82[CEU][hapmap]
rs7930115	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7931174	0.83[ASW][hapmap];0.85[CEU][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap]
rs7938386	0.89[ASN][1000 genomes]
rs7942891	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75709200-75745400	Weak transcription	Psoas Muscle	Psoas
2	chr11:75711600-75743600	Weak transcription	Pancreas	Pancrea
3	chr11:75713600-75734600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:75713800-75737200	Strong transcription	Primary B cells from cord blood	blood
5	chr11:75713800-75739600	Weak transcription	Fetal Brain Female	brain
6	chr11:75716800-75734200	Weak transcription	K562	blood
7	chr11:75716800-75734800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:75716800-75778200	Weak transcription	Ovary	ovary
9	chr11:75717000-75736200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:75717000-75741200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:75717200-75741400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:75717400-75734200	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:75717400-75734800	Weak transcription	A549	lung
14	chr11:75717600-75739600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:75717800-75741200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:75718400-75746400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:75718400-75755200	Weak transcription	Esophagus	oesophagus
18	chr11:75719400-75734200	Weak transcription	HMEC	breast
19	chr11:75719400-75736000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:75719400-75755000	Weak transcription	Left Ventricle	heart
21	chr11:75720000-75757600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:75721600-75735600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:75723800-75736200	Weak transcription	Brain Anterior Caudate	brain
24	chr11:75724000-75737400	Weak transcription	Fetal Brain Male	brain
25	chr11:75724200-75734400	Weak transcription	Brain Substantia Nigra	brain
26	chr11:75724800-75733600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:75724800-75743600	Weak transcription	Aorta	Aorta
28	chr11:75728600-75738000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:75728800-75734000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:75728800-75735200	Weak transcription	Fetal Kidney	kidney
31	chr11:75728800-75735200	Weak transcription	NHDF-Ad	bronchial
32	chr11:75728800-75736000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:75728800-75736000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:75728800-75738000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:75728800-75741400	Weak transcription	Hela-S3	cervix
36	chr11:75728800-75742600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr11:75728800-75757400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr11:75729000-75735800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:75729000-75735800	Weak transcription	HSMM	muscle
40	chr11:75729000-75736000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:75729000-75759600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:75729200-75734200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:75729200-75735200	Weak transcription	Osteobl	bone
44	chr11:75729200-75735400	Weak transcription	NHLF	lung
45	chr11:75729400-75734200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:75729400-75758200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:75730200-75736000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:75730800-75733800	Weak transcription	Colonic Mucosa	Colon
49	chr11:75730800-75734000	Weak transcription	NHEK	skin
50	chr11:75731200-75736000	Weak transcription	Fetal Lung	lung

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