Variant report

Variant	rs11236597
Chromosome Location	chr11:75717849-75717850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75701857..75704473-chr11:75717022..75719427,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10899157	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs11236614	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs11236623	0.82[AMR][1000 genomes]
rs57998123	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58497852	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592618	0.83[ASN][1000 genomes]
rs6592621	0.80[ASN][1000 genomes]
rs73001504	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73001570	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73496143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73500004	0.82[AMR][1000 genomes]
rs7938386	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75693000-75728200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:75693000-75730000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:75695600-75728000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:75701800-75721800	Weak transcription	Small Intestine	intestine
5	chr11:75701800-75726200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:75707800-75721400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:75708800-75727800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:75709200-75745400	Weak transcription	Psoas Muscle	Psoas
9	chr11:75711600-75743600	Weak transcription	Pancreas	Pancrea
10	chr11:75712600-75725800	Strong transcription	GM12878-XiMat	blood
11	chr11:75712600-75726200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:75712800-75719400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:75712800-75723400	Weak transcription	Brain Anterior Caudate	brain
14	chr11:75712800-75727800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:75712800-75731200	Weak transcription	Right Ventricle	heart
16	chr11:75713000-75723600	Weak transcription	Fetal Brain Male	brain
17	chr11:75713200-75728000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:75713200-75728200	Weak transcription	Fetal Kidney	kidney
19	chr11:75713400-75718000	Weak transcription	Fetal Heart	heart
20	chr11:75713600-75719400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:75713600-75721800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:75713600-75728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:75713600-75734600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:75713800-75720000	Weak transcription	Brain Germinal Matrix	brain
25	chr11:75713800-75737200	Strong transcription	Primary B cells from cord blood	blood
26	chr11:75713800-75739600	Weak transcription	Fetal Brain Female	brain
27	chr11:75714000-75718200	Weak transcription	HMEC	breast
28	chr11:75714000-75719400	Strong transcription	Primary hematopoietic stem cells	blood
29	chr11:75714000-75720600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:75714600-75719600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:75714800-75718200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:75714800-75718400	Strong transcription	Primary T cells from cord blood	blood
33	chr11:75714800-75718400	Strong transcription	Fetal Muscle Leg	muscle
34	chr11:75714800-75718600	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr11:75714800-75719000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:75714800-75719400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:75714800-75719400	Strong transcription	Liver	Liver
38	chr11:75714800-75719600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:75714800-75721600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:75714800-75721600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:75714800-75722200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:75714800-75724400	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr11:75715000-75718600	Strong transcription	Thymus	Thymus
44	chr11:75715000-75719200	Strong transcription	HepG2	liver
45	chr11:75715000-75719600	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:75715000-75719800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr11:75715000-75721000	Strong transcription	Adipose Nuclei	Adipose
48	chr11:75715000-75721000	Strong transcription	Dnd41	blood
49	chr11:75715000-75722200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:75715000-75724000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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