Variant report

Variant	rs73001504
Chromosome Location	chr11:75741731-75741732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75741432..75743179-chr11:75743618..75746649,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10899155	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11236597	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11825236	0.84[AFR][1000 genomes]
rs57998123	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58497852	0.90[EUR][1000 genomes]
rs7118476	0.84[AFR][1000 genomes]
rs73001570	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73001581	0.85[ASN][1000 genomes]
rs73496143	0.90[EUR][1000 genomes]
rs7928420	0.84[AFR][1000 genomes]
rs7938386	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75709200-75745400	Weak transcription	Psoas Muscle	Psoas
2	chr11:75711600-75743600	Weak transcription	Pancreas	Pancrea
3	chr11:75716800-75778200	Weak transcription	Ovary	ovary
4	chr11:75718400-75746400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:75718400-75755200	Weak transcription	Esophagus	oesophagus
6	chr11:75719400-75755000	Weak transcription	Left Ventricle	heart
7	chr11:75720000-75757600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:75724800-75743600	Weak transcription	Aorta	Aorta
9	chr11:75728800-75742600	Strong transcription	Primary B cells from peripheral blood	blood
10	chr11:75728800-75757400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:75729000-75759600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:75729400-75758200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:75731200-75759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:75731400-75758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:75731400-75758400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr11:75731600-75743600	Weak transcription	Gastric	stomach
17	chr11:75731600-75755000	Weak transcription	Right Ventricle	heart
18	chr11:75731600-75771800	Weak transcription	Lung	lung
19	chr11:75731800-75759000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:75732200-75748400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:75732200-75748400	Weak transcription	Fetal Thymus	thymus
22	chr11:75732200-75755400	Weak transcription	Spleen	Spleen
23	chr11:75732200-75758200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:75732200-75771400	Weak transcription	Fetal Intestine Large	intestine
25	chr11:75732400-75755200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:75732400-75757200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:75733000-75759800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:75733000-75762800	Weak transcription	HepG2	liver
29	chr11:75734600-75755200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:75734600-75760000	Weak transcription	Thymus	Thymus
31	chr11:75734800-75743600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:75736400-75748400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:75736400-75755000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:75736600-75742000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:75736600-75771400	Weak transcription	Fetal Stomach	stomach
36	chr11:75736800-75742000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:75736800-75751800	Weak transcription	Primary T cells from cord blood	blood
38	chr11:75736800-75777000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:75737000-75758200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:75737200-75741800	Weak transcription	Brain Angular Gyrus	brain
41	chr11:75738000-75742800	Strong transcription	Primary B cells from cord blood	blood
42	chr11:75740200-75776600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:75740200-75779000	Weak transcription	Fetal Muscle Leg	muscle
44	chr11:75740400-75742400	Strong transcription	GM12878-XiMat	blood
45	chr11:75740400-75742800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr11:75740400-75743000	Enhancers	Muscle Satellite Cultured Cells	--
47	chr11:75740400-75749600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:75740400-75749800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:75740400-75757000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:75740400-75759200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links