Variant report

Variant	rs7928420
Chromosome Location	chr11:75842148-75842149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75841396..75843051-chr11:75844973..75846775,2	K562	blood:
2	chr11:75840057..75843029-chr11:75846678..75850305,4	MCF-7	breast:
3	chr11:75840494..75842452-chr11:75842654..75844763,2	K562	blood:

Variant related genes	Relation type
ENSG00000255421	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10899155	1.00[AFR][1000 genomes]
rs10899157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236623	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11825236	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12221774	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs2139935	0.85[ASN][1000 genomes]
rs7118476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73001504	0.84[AFR][1000 genomes]
rs73001570	1.00[AFR][1000 genomes]
rs73001581	0.85[AFR][1000 genomes]
rs73500004	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926198	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:75820800-75842200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr11:75822000-75852200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:75825600-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:75825800-75852800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
7	chr11:75827200-75851800	Weak transcription	Gastric	stomach
8	chr11:75827400-75851800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:75827400-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:75827600-75851800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:75827600-75851800	Weak transcription	Dnd41	blood
12	chr11:75827800-75842200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:75827800-75849400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:75827800-75851400	Weak transcription	HepG2	liver
15	chr11:75828000-75842200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:75831400-75851800	Weak transcription	Fetal Thymus	thymus
17	chr11:75831600-75843800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:75831800-75845200	Weak transcription	Liver	Liver
19	chr11:75831800-75851600	Weak transcription	Spleen	Spleen
20	chr11:75832000-75861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:75832400-75842200	Weak transcription	Fetal Intestine Small	intestine
22	chr11:75832400-75852000	Weak transcription	Fetal Intestine Large	intestine
23	chr11:75832600-75843000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:75832600-75844400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:75832600-75846200	Weak transcription	HUVEC	blood vessel
26	chr11:75832600-75857600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:75832800-75851200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:75832800-75851400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr11:75832800-75851800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:75832800-75859400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:75833000-75842200	Weak transcription	Right Ventricle	heart
32	chr11:75833000-75842200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:75833000-75845800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:75833000-75846400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:75833000-75851600	Weak transcription	Lung	lung
36	chr11:75833000-75854400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:75833000-75862800	Weak transcription	K562	blood
38	chr11:75833400-75855000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:75833400-75872800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:75834400-75846600	Weak transcription	Thymus	Thymus
41	chr11:75834400-75862800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:75834600-75851400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:75834800-75851600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:75834800-75851800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:75835800-75843000	Weak transcription	Fetal Brain Male	brain
46	chr11:75836200-75851800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:75836400-75849400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:75836600-75848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:75836600-75851400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:75836600-75851800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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