Variant report

Variant	rs73001570
Chromosome Location	chr11:75760819-75760820
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10899155	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236597	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11236614	0.84[EUR][1000 genomes]
rs11825236	1.00[AFR][1000 genomes]
rs57998123	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58497852	0.87[EUR][1000 genomes]
rs7118476	1.00[AFR][1000 genomes]
rs73001504	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73001581	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73496143	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7928420	1.00[AFR][1000 genomes]
rs7938386	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75716800-75778200	Weak transcription	Ovary	ovary
2	chr11:75731600-75771800	Weak transcription	Lung	lung
3	chr11:75732200-75771400	Weak transcription	Fetal Intestine Large	intestine
4	chr11:75733000-75762800	Weak transcription	HepG2	liver
5	chr11:75736600-75771400	Weak transcription	Fetal Stomach	stomach
6	chr11:75736800-75777000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:75740200-75776600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:75740200-75779000	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:75740400-75772600	Weak transcription	Liver	Liver
10	chr11:75742400-75784800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:75742400-75785400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:75743000-75784800	Weak transcription	Brain Substantia Nigra	brain
13	chr11:75744000-75763000	Weak transcription	Gastric	stomach
14	chr11:75744000-75803200	Weak transcription	Aorta	Aorta
15	chr11:75748800-75780800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:75748800-75794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:75755400-75779200	Weak transcription	Right Ventricle	heart
18	chr11:75755800-75761600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr11:75755800-75776800	Weak transcription	Left Ventricle	heart
20	chr11:75756000-75772600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:75757200-75761200	ZNF genes & repeats	GM12878-XiMat	blood
22	chr11:75757800-75761200	Enhancers	NHDF-Ad	bronchial
23	chr11:75758000-75761200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chr11:75758000-75761200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr11:75758200-75761000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:75758200-75761200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr11:75758200-75761200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:75758600-75762800	Weak transcription	Stomach Mucosa	stomach
29	chr11:75758600-75763000	Weak transcription	Pancreas	Pancrea
30	chr11:75758800-75761000	ZNF genes & repeats	Primary B cells from cord blood	blood
31	chr11:75758800-75762800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:75759000-75761000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
33	chr11:75759200-75761000	ZNF genes & repeats	Fetal Intestine Small	intestine
34	chr11:75759200-75761200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:75759400-75761000	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:75759400-75778200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:75759600-75761200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr11:75759800-75761200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
39	chr11:75759800-75761400	ZNF genes & repeats	Dnd41	blood
40	chr11:75759800-75762800	Weak transcription	Primary T cells from cord blood	blood
41	chr11:75760000-75761000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:75760000-75761000	ZNF genes & repeats	Thymus	Thymus
43	chr11:75760000-75776000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:75760000-75777800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:75760200-75761600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:75760200-75776800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr11:75760400-75761000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
48	chr11:75760400-75765200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr11:75760400-75767200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:75760400-75772800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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