Variant report

Variant	rs73001581
Chromosome Location	chr11:75792242-75792243
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75785629..75788813-chr11:75789909..75792766,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10899155	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236614	0.97[EUR][1000 genomes]
rs11825236	0.85[AFR][1000 genomes]
rs57998123	0.83[ASN][1000 genomes]
rs7118476	0.85[AFR][1000 genomes]
rs73001504	0.85[ASN][1000 genomes]
rs73001570	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7928420	0.85[AFR][1000 genomes]
rs7938386	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75744000-75803200	Weak transcription	Aorta	Aorta
2	chr11:75748800-75794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:75764400-75807400	Weak transcription	NHEK	skin
4	chr11:75770800-75796800	Weak transcription	Psoas Muscle	Psoas
5	chr11:75771800-75827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:75774400-75794400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:75775200-75794600	Weak transcription	Hela-S3	cervix
8	chr11:75778600-75794600	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:75778800-75801000	Weak transcription	Fetal Intestine Small	intestine
10	chr11:75779200-75799000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:75779400-75796400	Weak transcription	Primary T cells from cord blood	blood
12	chr11:75779400-75798800	Weak transcription	Placenta	Placenta
13	chr11:75779400-75801400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr11:75779400-75813600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:75779400-75827000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:75779600-75813800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:75779800-75826600	Weak transcription	Fetal Thymus	thymus
18	chr11:75780400-75794600	Weak transcription	Fetal Intestine Large	intestine
19	chr11:75780400-75801000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:75780400-75827000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:75781000-75794200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:75781000-75801200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:75781400-75799000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:75785800-75827200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:75786200-75794000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:75786200-75794600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:75786200-75796200	Weak transcription	Small Intestine	intestine
28	chr11:75786200-75797800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:75786800-75801000	Weak transcription	Fetal Stomach	stomach
30	chr11:75789000-75794000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:75789000-75794600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:75789000-75812000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:75789000-75827200	Weak transcription	Liver	Liver
34	chr11:75789200-75793600	Weak transcription	HUVEC	blood vessel
35	chr11:75789200-75793800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:75789200-75794400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:75789200-75794400	Weak transcription	Fetal Lung	lung
38	chr11:75789200-75794400	Weak transcription	NH-A	brain
39	chr11:75789200-75794400	Weak transcription	Osteobl	bone
40	chr11:75789200-75794600	Weak transcription	HSMM	muscle
41	chr11:75789200-75795800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:75789200-75796200	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:75789200-75801000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:75789400-75793800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:75789400-75793800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr11:75789400-75794000	Weak transcription	NHDF-Ad	bronchial
47	chr11:75789400-75794000	Weak transcription	NHLF	lung
48	chr11:75789400-75794400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:75789400-75796600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr11:75789400-75797200	Weak transcription	HSMMtube	muscle

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