Variant report

Variant	rs7114396
Chromosome Location	chr11:75681564-75681565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75663345..75665731-chr11:75679525..75682423,2	MCF-7	breast:
2	chr11:75670316..75672812-chr11:75680099..75682196,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6592618	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6592621	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6592622	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66918243	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67886321	0.81[AMR][1000 genomes]
rs7116263	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72999583	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7930115	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75625000-75682400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:75658000-75684000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:75658800-75695400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:75663800-75682400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:75667000-75715200	Weak transcription	Left Ventricle	heart
6	chr11:75672200-75694600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:75672800-75683400	Weak transcription	Liver	Liver
8	chr11:75673000-75714800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:75674400-75682400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:75674400-75682800	Weak transcription	Fetal Intestine Small	intestine
11	chr11:75674400-75694400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:75674400-75694600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:75675800-75700200	Weak transcription	Lung	lung
14	chr11:75678000-75682800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:75678000-75695000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:75678000-75715600	Weak transcription	Aorta	Aorta
17	chr11:75678200-75682000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:75678200-75682200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:75678200-75694400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr11:75678400-75682000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:75678400-75683200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:75678400-75684000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:75678600-75684000	Weak transcription	Adipose Nuclei	Adipose
24	chr11:75679200-75685800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:75679200-75694600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:75679400-75690600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:75679400-75698000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:75679600-75699000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:75679600-75716400	Weak transcription	Hela-S3	cervix
30	chr11:75679800-75694400	Weak transcription	HUVEC	blood vessel
31	chr11:75679800-75697800	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:75680400-75684200	Weak transcription	Fetal Lung	lung
33	chr11:75681000-75682400	Weak transcription	GM12878-XiMat	blood
34	chr11:75681000-75700400	Weak transcription	Small Intestine	intestine
35	chr11:75681200-75684000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr11:75681400-75683400	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links