Variant report

Variant	rs7116263
Chromosome Location	chr11:75726788-75726789
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75726530..75729145-chr11:75729300..75731180,2	K562	blood:
2	chr11:75721591..75723441-chr11:75726298..75728492,2	K562	blood:
3	chr11:75725861..75727648-chr11:75734712..75737245,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11236614	0.84[CHB][hapmap]
rs58497852	0.83[ASN][1000 genomes]
rs6592618	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592621	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592622	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66918243	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7114396	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72999583	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7930115	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7931174	0.83[CHB][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv975380	chr11:75721675-75728222	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75693000-75728200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:75693000-75730000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:75695600-75728000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:75708800-75727800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:75709200-75745400	Weak transcription	Psoas Muscle	Psoas
6	chr11:75711600-75743600	Weak transcription	Pancreas	Pancrea
7	chr11:75712800-75727800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr11:75712800-75731200	Weak transcription	Right Ventricle	heart
9	chr11:75713200-75728000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:75713200-75728200	Weak transcription	Fetal Kidney	kidney
11	chr11:75713600-75728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:75713600-75734600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:75713800-75737200	Strong transcription	Primary B cells from cord blood	blood
14	chr11:75713800-75739600	Weak transcription	Fetal Brain Female	brain
15	chr11:75715600-75728000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:75716000-75728400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:75716800-75728000	Weak transcription	Hela-S3	cervix
18	chr11:75716800-75734200	Weak transcription	K562	blood
19	chr11:75716800-75734800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:75716800-75778200	Weak transcription	Ovary	ovary
21	chr11:75717000-75728000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:75717000-75728200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:75717000-75728200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr11:75717000-75728400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:75717000-75728400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:75717000-75730200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr11:75717000-75730600	Weak transcription	Fetal Thymus	thymus
28	chr11:75717000-75730800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:75717000-75736200	Weak transcription	Brain Angular Gyrus	brain
30	chr11:75717000-75741200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr11:75717200-75727800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:75717200-75730600	Weak transcription	Lung	lung
33	chr11:75717200-75730800	Weak transcription	Fetal Intestine Large	intestine
34	chr11:75717200-75730800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr11:75717200-75730800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:75717200-75741400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:75717400-75727800	Weak transcription	Placenta	Placenta
38	chr11:75717400-75728000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:75717400-75734200	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:75717400-75734800	Weak transcription	A549	lung
41	chr11:75717600-75739600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:75717800-75741200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr11:75718200-75728200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:75718200-75730600	Weak transcription	Spleen	Spleen
45	chr11:75718400-75730400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:75718400-75730600	Weak transcription	Fetal Muscle Leg	muscle
47	chr11:75718400-75730800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:75718400-75746400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:75718400-75755200	Weak transcription	Esophagus	oesophagus
50	chr11:75718600-75730600	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links