Variant report

Variant	rs7111495
Chromosome Location	chr11:75720240-75720241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs11821272	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822333	0.91[EUR][1000 genomes]
rs11825311	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11825529	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11826581	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827501	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828568	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1380077	0.82[GIH][hapmap];0.85[TSI][hapmap]
rs1470235	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521529	0.91[EUR][1000 genomes]
rs1521530	0.91[EUR][1000 genomes]
rs17134442	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs17134493	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134497	1.00[EUR][1000 genomes]
rs17134510	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134532	0.91[EUR][1000 genomes]
rs17134568	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134571	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134575	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134576	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810401	1.00[ASN][1000 genomes]
rs2099856	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2139934	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165673	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5026790	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs56071239	0.80[AMR][1000 genomes]
rs56117351	1.00[EUR][1000 genomes]
rs56154425	1.00[EUR][1000 genomes]
rs56272311	0.91[EUR][1000 genomes]
rs56803972	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092805	0.91[EUR][1000 genomes]
rs57211393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57307347	0.91[EUR][1000 genomes]
rs57372160	1.00[EUR][1000 genomes]
rs57603155	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723633	0.89[AMR][1000 genomes]
rs58402577	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58550963	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58719494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59131065	0.80[AMR][1000 genomes]
rs59786011	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59789333	0.84[EUR][1000 genomes]
rs60175455	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60864005	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61422358	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624710	1.00[EUR][1000 genomes]
rs6592619	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592620	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592624	0.91[EUR][1000 genomes]
rs6592625	0.91[EUR][1000 genomes]
rs6592626	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6592627	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7102363	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102772	1.00[EUR][1000 genomes]
rs7103027	0.91[EUR][1000 genomes]
rs7103307	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103473	0.91[EUR][1000 genomes]
rs7104995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107438	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107458	1.00[JPT][hapmap]
rs7107640	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108353	0.91[EUR][1000 genomes]
rs7109579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110016	1.00[EUR][1000 genomes]
rs7110886	1.00[EUR][1000 genomes]
rs7112734	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114160	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7114434	0.91[EUR][1000 genomes]
rs7115333	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115657	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs7115733	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119636	1.00[ASN][1000 genomes]
rs7120267	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7121323	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121876	0.91[EUR][1000 genomes]
rs7123752	1.00[EUR][1000 genomes]
rs7126845	0.85[TSI][hapmap]
rs7127326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129228	0.91[EUR][1000 genomes]
rs7129433	0.96[EUR][1000 genomes]
rs7131447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713275	0.82[GIH][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs73493967	0.91[EUR][1000 genomes]
rs73493979	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496123	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496136	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496149	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496171	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496192	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498213	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498295	0.91[EUR][1000 genomes]
rs73498302	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927868	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7930216	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931944	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7933383	1.00[EUR][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7935047	0.91[EUR][1000 genomes]
rs7937889	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7941207	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7941335	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942891	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944561	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7946566	1.00[CEU][hapmap]
rs7947864	1.00[EUR][1000 genomes]
rs7948123	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949819	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7952260	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75693000-75728200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:75693000-75730000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:75695600-75728000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:75701800-75721800	Weak transcription	Small Intestine	intestine
5	chr11:75701800-75726200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:75707800-75721400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:75708800-75727800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:75709200-75745400	Weak transcription	Psoas Muscle	Psoas
9	chr11:75711600-75743600	Weak transcription	Pancreas	Pancrea
10	chr11:75712600-75725800	Strong transcription	GM12878-XiMat	blood
11	chr11:75712600-75726200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:75712800-75723400	Weak transcription	Brain Anterior Caudate	brain
13	chr11:75712800-75727800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr11:75712800-75731200	Weak transcription	Right Ventricle	heart
15	chr11:75713000-75723600	Weak transcription	Fetal Brain Male	brain
16	chr11:75713200-75728000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:75713200-75728200	Weak transcription	Fetal Kidney	kidney
18	chr11:75713600-75721800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr11:75713600-75728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:75713600-75734600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:75713800-75737200	Strong transcription	Primary B cells from cord blood	blood
22	chr11:75713800-75739600	Weak transcription	Fetal Brain Female	brain
23	chr11:75714000-75720600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:75714800-75721600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:75714800-75721600	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:75714800-75722200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:75714800-75724400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr11:75715000-75721000	Strong transcription	Adipose Nuclei	Adipose
29	chr11:75715000-75721000	Strong transcription	Dnd41	blood
30	chr11:75715000-75722200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:75715000-75724000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:75715600-75728000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:75716000-75728400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:75716400-75721600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:75716600-75720400	Enhancers	NHLF	lung
36	chr11:75716600-75721000	Enhancers	Osteobl	bone
37	chr11:75716800-75723400	Weak transcription	Fetal Lung	lung
38	chr11:75716800-75728000	Weak transcription	Hela-S3	cervix
39	chr11:75716800-75734200	Weak transcription	K562	blood
40	chr11:75716800-75734800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:75716800-75778200	Weak transcription	Ovary	ovary
42	chr11:75717000-75723600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:75717000-75723600	Weak transcription	Brain Substantia Nigra	brain
44	chr11:75717000-75724000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:75717000-75728000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:75717000-75728200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:75717000-75728200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr11:75717000-75728400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:75717000-75728400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:75717000-75730200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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