Variant report

Variant	rs5026790
Chromosome Location	chr11:75640226-75640227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11820368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822610	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11823080	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11825180	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11825402	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11827625	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11828568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380074	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1380075	0.91[EUR][1000 genomes]
rs1380076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1380077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17134442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17134444	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134447	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58050930	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59147439	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59656978	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60175455	0.84[EUR][1000 genomes]
rs60935802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61311719	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592616	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592626	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs6592627	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7104218	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7107458	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7108765	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109235	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109363	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7113365	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7114160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7115483	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7115657	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[EUR][1000 genomes]
rs7117696	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7120267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126845	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7127326	0.81[GIH][hapmap];1.00[TSI][hapmap]
rs713275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73493909	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493938	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493942	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73493943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493944	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927853	0.97[EUR][1000 genomes]
rs7927868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931418	0.97[EUR][1000 genomes]
rs7931944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7937633	0.94[EUR][1000 genomes]
rs7937889	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7941207	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949033	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7951333	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75586600-75676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:75603600-75657000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:75604600-75657600	Weak transcription	Fetal Thymus	thymus
4	chr11:75606400-75652400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:75622800-75657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:75625000-75682400	Weak transcription	Primary T cells from cord blood	blood
7	chr11:75625200-75642200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:75625200-75644400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:75625200-75656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:75625400-75645400	Weak transcription	Dnd41	blood
11	chr11:75625400-75657600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:75625600-75652400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:75631000-75640800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:75634000-75640600	Weak transcription	Small Intestine	intestine
15	chr11:75636200-75642200	Weak transcription	Right Ventricle	heart
16	chr11:75636200-75649400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:75636200-75649600	Weak transcription	Left Ventricle	heart
18	chr11:75636400-75641400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:75636400-75649600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:75636400-75677400	Weak transcription	Hela-S3	cervix
21	chr11:75636600-75640400	Weak transcription	Fetal Lung	lung
22	chr11:75637000-75656400	Weak transcription	Brain Anterior Caudate	brain
23	chr11:75637200-75641600	Weak transcription	Brain Substantia Nigra	brain
24	chr11:75637200-75641600	Weak transcription	HUVEC	blood vessel
25	chr11:75637200-75642200	Weak transcription	NHDF-Ad	bronchial
26	chr11:75637400-75640800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:75637400-75641600	Weak transcription	Brain Angular Gyrus	brain
28	chr11:75637400-75641800	Weak transcription	NHEK	skin
29	chr11:75637400-75642200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:75637400-75642400	Weak transcription	Osteobl	bone
31	chr11:75637400-75643600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:75637400-75651000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:75637400-75651000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:75637600-75642200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:75637800-75642200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:75638000-75642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:75638800-75649600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:75639400-75649600	Weak transcription	GM12878-XiMat	blood
39	chr11:75639400-75656800	Weak transcription	Fetal Intestine Small	intestine
40	chr11:75639600-75644200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr11:75640200-75647400	Strong transcription	Primary B cells from cord blood	blood

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