Variant report

Variant	rs7931418
Chromosome Location	chr11:75662772-75662773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11820368	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11822610	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11823080	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11825180	0.91[EUR][1000 genomes]
rs11825311	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs11825402	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11827625	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11828568	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs1380074	0.91[EUR][1000 genomes]
rs1380075	0.88[EUR][1000 genomes]
rs1380076	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1380077	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs17134442	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17134444	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17134447	0.94[EUR][1000 genomes]
rs17134448	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17134477	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs17810401	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1995893	0.97[EUR][1000 genomes]
rs2099856	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2371719	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5026790	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs56366270	0.97[EUR][1000 genomes]
rs58050930	0.97[EUR][1000 genomes]
rs59147439	0.91[EUR][1000 genomes]
rs59656978	0.91[EUR][1000 genomes]
rs60175455	0.87[EUR][1000 genomes]
rs60935802	0.97[EUR][1000 genomes]
rs61311719	0.91[EUR][1000 genomes]
rs6592616	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6592626	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs6592627	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7104218	0.88[EUR][1000 genomes]
rs7107458	1.00[CEU][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes]
rs7108765	0.91[EUR][1000 genomes]
rs7109235	0.91[EUR][1000 genomes]
rs7109363	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7113365	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114160	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7115483	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7115657	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117696	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7120267	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7126845	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7127326	0.81[GIH][hapmap];1.00[TSI][hapmap]
rs713275	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs73493909	0.97[EUR][1000 genomes]
rs73493938	0.97[EUR][1000 genomes]
rs73493942	0.97[EUR][1000 genomes]
rs73493943	0.97[EUR][1000 genomes]
rs73493944	0.97[EUR][1000 genomes]
rs73493952	0.97[EUR][1000 genomes]
rs7927825	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7927853	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7927868	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7931944	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.97[EUR][1000 genomes]
rs7937633	0.91[EUR][1000 genomes]
rs7937889	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7941207	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7946059	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7949033	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7951333	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75586600-75676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:75625000-75682400	Weak transcription	Primary T cells from cord blood	blood
3	chr11:75636400-75677400	Weak transcription	Hela-S3	cervix
4	chr11:75653000-75672200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:75653200-75672200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:75655400-75671200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:75655800-75664000	Weak transcription	Primary B cells from cord blood	blood
8	chr11:75658000-75666600	Weak transcription	Pancreas	Pancrea
9	chr11:75658000-75684000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:75658200-75665400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:75658200-75666600	Weak transcription	Ovary	ovary
12	chr11:75658200-75666600	Weak transcription	Right Atrium	heart
13	chr11:75658200-75671600	Weak transcription	Psoas Muscle	Psoas
14	chr11:75658200-75672600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:75658200-75674000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:75658200-75677400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:75658400-75670000	Weak transcription	K562	blood
18	chr11:75658400-75677600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:75658400-75677800	Weak transcription	Small Intestine	intestine
20	chr11:75658600-75678000	Weak transcription	Fetal Stomach	stomach
21	chr11:75658800-75673600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:75658800-75695400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:75659600-75677000	Weak transcription	HUVEC	blood vessel
24	chr11:75659600-75678000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:75660400-75665000	Weak transcription	NHDF-Ad	bronchial
26	chr11:75660400-75677600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:75660600-75665000	Weak transcription	Brain Angular Gyrus	brain
28	chr11:75660600-75665200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:75661000-75665000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:75661000-75666600	Weak transcription	Fetal Lung	lung
31	chr11:75661600-75665400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:75661800-75664800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:75661800-75664800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:75661800-75666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:75662200-75663400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:75662200-75665200	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:75662200-75665800	Weak transcription	GM12878-XiMat	blood

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