Variant report

Variant	rs11827625
Chromosome Location	chr11:75591539-75591540
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11820368	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11822610	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11823080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825402	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1380074	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380075	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1380076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17134444	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17134447	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17134448	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17134477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1995893	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2099856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2371719	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5026790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56366270	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58050930	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59147439	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59656978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60935802	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61311719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592616	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104218	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107458	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7108765	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109363	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113365	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7114160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7115483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115657	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7117696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126845	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493909	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73493938	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73493942	0.94[EUR][1000 genomes]
rs73493943	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73493944	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73493952	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7927825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927853	0.91[EUR][1000 genomes]
rs7927868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931418	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7931944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937633	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7941207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7949033	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75547600-75600000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:75549800-75602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:75553800-75600800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:75558400-75602800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:75562600-75630400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:75562800-75610800	Weak transcription	HSMMtube	muscle
7	chr11:75565400-75592000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:75570000-75610600	Weak transcription	NHDF-Ad	bronchial
9	chr11:75570200-75600000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:75570200-75610400	Weak transcription	Osteobl	bone
11	chr11:75571800-75603200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:75572600-75603200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:75574200-75603200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:75576000-75603000	Weak transcription	Hela-S3	cervix
15	chr11:75579200-75610000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:75580200-75592000	Weak transcription	Pancreas	Pancrea
17	chr11:75580400-75610800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:75580800-75603200	Weak transcription	Fetal Kidney	kidney
19	chr11:75581000-75599800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:75582200-75600600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:75584600-75624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:75585000-75592200	Weak transcription	Gastric	stomach
23	chr11:75585000-75595200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:75585000-75603200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:75585000-75610000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:75585000-75628400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr11:75585200-75596000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:75585200-75599200	Weak transcription	Small Intestine	intestine
29	chr11:75585200-75600200	Weak transcription	Fetal Thymus	thymus
30	chr11:75585200-75601600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:75585200-75602800	Weak transcription	Lung	lung
32	chr11:75585200-75602800	Weak transcription	Spleen	Spleen
33	chr11:75585200-75603400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:75585200-75603600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:75585200-75605200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:75585400-75605000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:75586200-75591600	Weak transcription	Fetal Intestine Small	intestine
38	chr11:75586200-75592200	Weak transcription	Colon Smooth Muscle	Colon
39	chr11:75586400-75592200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr11:75586400-75594600	Weak transcription	Fetal Brain Male	brain
41	chr11:75586600-75615400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:75586600-75676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:75587000-75602400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:75587200-75598000	Weak transcription	Left Ventricle	heart
45	chr11:75587400-75621600	Weak transcription	Ovary	ovary
46	chr11:75587600-75594400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:75587600-75614600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:75587600-75631600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:75587800-75592400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:75587800-75602600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links