Variant report

Variant	rs7109235
Chromosome Location	chr11:75603050-75603051
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75599026..75601409-chr11:75602652..75605269,2	MCF-7	breast:
2	chr11:75596310..75598967-chr11:75601075..75603866,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11820368	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11822610	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11823080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825180	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825402	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827625	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828568	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1380074	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380075	0.97[EUR][1000 genomes]
rs1380076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17134444	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17134447	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17134448	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17134477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1995893	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2099856	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2371719	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5026790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56366270	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58050930	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59147439	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59656978	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60935802	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61311719	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592616	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104218	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107458	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7108765	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109363	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113365	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7114160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7115483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115657	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[EUR][1000 genomes]
rs7117696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126845	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127326	0.81[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs713275	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73493909	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73493938	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73493942	0.94[EUR][1000 genomes]
rs73493943	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73493944	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73493952	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7927825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927853	0.91[EUR][1000 genomes]
rs7927868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931418	0.91[EUR][1000 genomes]
rs7931944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937633	1.00[EUR][1000 genomes]
rs7941207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7949033	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951333	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75562600-75630400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:75562800-75610800	Weak transcription	HSMMtube	muscle
3	chr11:75570000-75610600	Weak transcription	NHDF-Ad	bronchial
4	chr11:75570200-75610400	Weak transcription	Osteobl	bone
5	chr11:75571800-75603200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:75572600-75603200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:75574200-75603200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:75579200-75610000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:75580400-75610800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:75580800-75603200	Weak transcription	Fetal Kidney	kidney
11	chr11:75584600-75624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:75585000-75603200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:75585000-75610000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:75585000-75628400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:75585200-75603400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:75585200-75603600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:75585200-75605200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:75585400-75605000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:75586600-75615400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:75586600-75676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:75587400-75621600	Weak transcription	Ovary	ovary
22	chr11:75587600-75614600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:75587600-75631600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:75589600-75635800	Weak transcription	NHEK	skin
25	chr11:75590400-75610600	Weak transcription	Fetal Lung	lung
26	chr11:75590600-75605800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:75590800-75603200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:75590800-75604600	Weak transcription	NH-A	brain
29	chr11:75590800-75627000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:75592200-75604800	Weak transcription	A549	lung
31	chr11:75592400-75603200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:75592600-75605000	Weak transcription	Pancreas	Pancrea
33	chr11:75592600-75613800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:75592800-75603200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:75592800-75604200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:75593200-75610400	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:75593400-75603400	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:75593600-75603200	Weak transcription	Liver	Liver
39	chr11:75596400-75610000	Weak transcription	Brain Angular Gyrus	brain
40	chr11:75598400-75607400	Weak transcription	Left Ventricle	heart
41	chr11:75598800-75605200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:75599000-75605000	Strong transcription	Primary T cells from cord blood	blood
43	chr11:75599200-75603800	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:75599400-75605200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:75599600-75603800	Weak transcription	NHLF	lung
46	chr11:75600200-75604600	Strong transcription	Fetal Thymus	thymus
47	chr11:75600200-75610400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:75600400-75615200	Weak transcription	Fetal Heart	heart
49	chr11:75600600-75604600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:75600600-75610600	Weak transcription	Rectal Smooth Muscle	rectum

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