Variant report

Variant	rs7952260
Chromosome Location	chr11:75831739-75831740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75829005..75831891-chr11:75836429..75839569,3	MCF-7	breast:
2	chr11:75817536..75821071-chr11:75829941..75832993,4	MCF-7	breast:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs11820084	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11821272	0.91[EUR][1000 genomes]
rs11822333	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11825311	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11825529	0.87[EUR][1000 genomes]
rs11826581	0.91[EUR][1000 genomes]
rs11828568	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1470235	0.91[EUR][1000 genomes]
rs1521529	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1521530	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17134493	0.91[EUR][1000 genomes]
rs17134497	0.91[EUR][1000 genomes]
rs17134510	0.91[EUR][1000 genomes]
rs17134532	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17134568	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134579	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134594	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2099856	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2139934	1.00[EUR][1000 genomes]
rs2165673	0.91[EUR][1000 genomes]
rs35688819	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5026790	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs56117351	0.91[EUR][1000 genomes]
rs56154425	0.91[EUR][1000 genomes]
rs56272311	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56803972	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57092805	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57211393	1.00[EUR][1000 genomes]
rs57307347	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57372160	0.91[EUR][1000 genomes]
rs57603155	0.91[EUR][1000 genomes]
rs58402577	0.91[EUR][1000 genomes]
rs58550963	0.87[EUR][1000 genomes]
rs59786011	0.91[EUR][1000 genomes]
rs59789333	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60864005	0.91[EUR][1000 genomes]
rs61422358	0.91[EUR][1000 genomes]
rs61624710	0.91[EUR][1000 genomes]
rs6592619	0.91[EUR][1000 genomes]
rs6592620	0.91[EUR][1000 genomes]
rs6592624	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592625	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592626	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592627	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7102363	0.91[EUR][1000 genomes]
rs7102772	0.91[EUR][1000 genomes]
rs7103027	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7103307	0.91[EUR][1000 genomes]
rs7103473	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7104995	1.00[EUR][1000 genomes]
rs7106336	0.91[EUR][1000 genomes]
rs7107438	0.91[EUR][1000 genomes]
rs7107640	1.00[EUR][1000 genomes]
rs7107716	0.91[EUR][1000 genomes]
rs7108353	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110016	0.91[EUR][1000 genomes]
rs7110886	0.91[EUR][1000 genomes]
rs7111495	0.91[EUR][1000 genomes]
rs7112734	0.91[EUR][1000 genomes]
rs7113130	0.91[EUR][1000 genomes]
rs7113414	0.91[EUR][1000 genomes]
rs7114160	0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7114434	1.00[EUR][1000 genomes]
rs7115333	0.91[EUR][1000 genomes]
rs7115657	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs7115733	0.87[EUR][1000 genomes]
rs7117569	0.82[ASN][1000 genomes]
rs7119636	0.82[EUR][1000 genomes]
rs7120267	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7121323	0.91[EUR][1000 genomes]
rs7121876	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7123752	0.91[EUR][1000 genomes]
rs7127326	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7127603	0.91[EUR][1000 genomes]
rs7129228	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7129433	0.87[EUR][1000 genomes]
rs7131447	0.91[EUR][1000 genomes]
rs73493967	0.83[EUR][1000 genomes]
rs73493979	0.91[EUR][1000 genomes]
rs73493995	0.91[EUR][1000 genomes]
rs73496123	0.91[EUR][1000 genomes]
rs73496136	0.91[EUR][1000 genomes]
rs73496149	0.91[EUR][1000 genomes]
rs73496171	0.91[EUR][1000 genomes]
rs73496192	1.00[EUR][1000 genomes]
rs73498213	1.00[EUR][1000 genomes]
rs73498295	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498302	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7928611	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7928973	0.87[ASN][1000 genomes]
rs7929964	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7930216	1.00[EUR][1000 genomes]
rs7933383	0.91[EUR][1000 genomes]
rs7933454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935047	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7937889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7941207	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7941335	0.91[EUR][1000 genomes]
rs7942870	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942891	0.91[EUR][1000 genomes]
rs7944561	0.82[EUR][1000 genomes]
rs7946059	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7946566	1.00[CEU][hapmap];0.87[ASN][1000 genomes]
rs7946584	0.87[ASN][1000 genomes]
rs7947864	0.91[EUR][1000 genomes]
rs7948123	0.91[EUR][1000 genomes]
rs7949819	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:75802800-75834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:75820800-75836000	Weak transcription	NHDF-Ad	bronchial
4	chr11:75820800-75842200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr11:75822000-75852200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:75825400-75832800	Weak transcription	Thymus	Thymus
7	chr11:75825400-75841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:75825600-75836800	Weak transcription	HSMMtube	muscle
9	chr11:75825600-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:75825800-75852800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
12	chr11:75826800-75840200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:75827200-75851800	Weak transcription	Gastric	stomach
14	chr11:75827400-75851800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:75827400-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:75827600-75834200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:75827600-75841000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:75827600-75851800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:75827600-75851800	Weak transcription	Dnd41	blood
20	chr11:75827800-75842200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:75827800-75849400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:75827800-75851400	Weak transcription	HepG2	liver
23	chr11:75828000-75832600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:75828000-75834000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:75828000-75842200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:75828200-75841800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:75829000-75832600	Weak transcription	K562	blood
28	chr11:75829800-75832400	Enhancers	Fetal Intestine Large	intestine
29	chr11:75830000-75832400	Enhancers	Fetal Intestine Small	intestine
30	chr11:75830000-75834000	Enhancers	Brain Hippocampus Middle	brain
31	chr11:75830200-75831800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:75830200-75831800	Enhancers	Right Ventricle	heart
33	chr11:75830200-75831800	Enhancers	Spleen	Spleen
34	chr11:75830200-75832000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:75830200-75832200	Enhancers	Colonic Mucosa	Colon
36	chr11:75830200-75832400	Enhancers	Colon Smooth Muscle	Colon
37	chr11:75830200-75832800	Enhancers	Psoas Muscle	Psoas
38	chr11:75830200-75832800	Enhancers	Small Intestine	intestine
39	chr11:75830200-75833000	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr11:75830200-75833200	Enhancers	Fetal Muscle Leg	muscle
41	chr11:75830200-75833200	Enhancers	Left Ventricle	heart
42	chr11:75830200-75833200	Enhancers	Right Atrium	heart
43	chr11:75830200-75833400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:75830200-75834600	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr11:75830400-75831800	Enhancers	Fetal Stomach	stomach
46	chr11:75830400-75833000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr11:75830400-75833200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:75830400-75833200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:75830400-75833400	Enhancers	H1 Cell Line	embryonic stem cell
50	chr11:75830400-75833400	Enhancers	Placenta	Placenta

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