Variant report

Variant	rs7113873
Chromosome Location	chr11:63580695-63580696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:63580528-63581482	MCF10A-Er-Src	breast:	n/a	n/a
2	REST	chr11:63580337-63582275	H1-neurons	neurons:	n/a	chr11:63581580-63581593 chr11:63581442-63581455 chr11:63581574-63581587 chr11:63581319-63581332
3	MAX	chr11:63580574-63581628	H1-hESC	embryonic stem cell:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
4	TAF1	chr11:63580318-63581101	PFSK-1	brain:	n/a	n/a
5	HEY1	chr11:63580523-63580811	HepG2	liver:	n/a	n/a
6	CBX3	chr11:63580027-63580911	K562	blood:	n/a	n/a
7	POLR2A	chr11:63580635-63581287	A549	lung:	n/a	n/a
8	YY1	chr11:63580476-63580972	K562	blood:	n/a	chr11:63580914-63580925
9	TAF1	chr11:63580690-63581017	GM12878	blood:	n/a	n/a
10	TCF12	chr11:63580522-63581025	GM12878	blood:	n/a	chr11:63580605-63580615
11	POLR2A	chr11:63580618-63581127	GM12878	blood:	n/a	n/a
12	ZBTB7A	chr11:63580439-63580930	ECC-1	luminal epithelium:	n/a	chr11:63580714-63580722 chr11:63580708-63580722
13	E2F6	chr11:63580559-63581162	K562	blood:	n/a	chr11:63580762-63580774
14	ELK1	chr11:63580530-63580985	Hela-S3	cervix:	n/a	n/a
15	CEBPD	chr11:63580496-63581130	HepG2	liver:	n/a	n/a
16	POLR2A	chr11:63580469-63581392	H1-neurons	neurons:	n/a	n/a
17	CTCF	chr11:63580560-63580710	SK-N-SH_RA	brain:	n/a	n/a
18	TAF1	chr11:63580592-63581012	PFSK-1	brain:	n/a	n/a
19	MAZ	chr11:63580253-63581942	K562	blood:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
20	POLR2A	chr11:63580588-63581691	MCF-7	breast:	n/a	n/a
21	IRF1	chr11:63580604-63580919	K562	blood:	n/a	n/a
22	POLR2A	chr11:63580667-63581564	GM12878	blood:	n/a	n/a
23	POLR2A	chr11:63580097-63581875	HepG2	liver:	n/a	n/a
24	E2F4	chr11:63580402-63581429	MCF10A-Er-Src	breast:	n/a	chr11:63580762-63580774 chr11:63580761-63580772
25	TBP	chr11:63580577-63582115	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr11:63580642-63581780	GM12878	blood:	n/a	n/a
27	SMC3	chr11:63580070-63580906	Hela-S3	cervix:	n/a	n/a
28	MAX	chr11:63580406-63581045	HCT-116	colon:	n/a	chr11:63580766-63580776 chr11:63580907-63580917
29	POLR2A	chr11:63580310-63582417	SK-N-MC	brain:	n/a	n/a
30	SRF	chr11:63580651-63581162	ECC-1	luminal epithelium:	n/a	chr11:63580889-63580907 chr11:63580893-63580906 chr11:63580892-63580906
31	POLR2A	chr11:63580644-63581830	ProgFib	skin:	n/a	n/a
32	POLR2A	chr11:63580443-63581119	SK-N-SH	brain:	n/a	n/a
33	BHLHE40	chr11:63580589-63581657	GM12878	blood:	n/a	n/a
34	RAD21	chr11:63580605-63580755	IMR90	lung:	n/a	n/a
35	POLR2A	chr11:63580574-63582320	GM12878	blood:	n/a	n/a
36	IRF1	chr11:63580667-63580988	K562	blood:	n/a	n/a
37	ZBTB7A	chr11:63580442-63581021	ECC-1	luminal epithelium:	n/a	chr11:63580714-63580722 chr11:63580708-63580722
38	TCF7L2	chr11:63580598-63581720	HCT-116	colon:	n/a	n/a
39	USF1	chr11:63580670-63580997	SK-N-SH	brain:	n/a	n/a
40	POLR2A	chr11:63580410-63582089	K562	blood:	n/a	n/a
41	USF1	chr11:63580626-63580907	SK-N-SH_RA	brain:	n/a	n/a
42	POLR2A	chr11:63580501-63581840	HUVEC	blood vessel:	n/a	n/a
43	SP1	chr11:63580550-63580953	GM12878	blood:	n/a	chr11:63580909-63580923
44	E2F6	chr11:63579940-63581635	K562	blood:	n/a	chr11:63580762-63580774 chr11:63581426-63581440 chr11:63581429-63581443
45	MAX	chr11:63580316-63582099	ECC-1	luminal epithelium:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
46	NFYA	chr11:63580404-63580797	K562	blood:	n/a	n/a
47	POLR2A	chr11:63580553-63581465	A549	lung:	n/a	n/a
48	HA-E2F1	chr11:63580203-63581657	MCF-7	breast:	n/a	chr11:63581078-63581089 chr11:63580762-63580774 chr11:63581426-63581440 chr11:63581429-63581443
49	MAX	chr11:63580293-63581839	HepG2	liver:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
50	MAX	chr11:63580232-63581859	A549	lung:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514

No.	Distal block	Cell Line	Cell type
1	chr11:63579552..63584409-chr11:63604789..63609677,6	K562	blood:
2	chr11:63580495..63581496-chr14:105956780..105958017,3	Hela-S3	cervix:
3	chr11:63580406..63581266-chr2:100105797..100106443,2	MCF-7	breast:
4	chr11:63579193..63582428-chr11:63682051..63685961,4	K562	blood:
5	chr11:63532131..63535124-chr11:63579146..63582872,4	K562	blood:
6	chr11:63580161..63582030-chr11:63668287..63670430,2	MCF-7	breast:
7	chr11:63577221..63582686-chr11:63583021..63587487,9	MCF-7	breast:
8	chr11:63448971..63451551-chr11:63580454..63582597,3	K562	blood:
9	chr11:63580673..63581365-chr5:32444535..32445243,2	NB4	blood:
10	chr11:63533773..63537846-chr11:63579275..63583196,6	MCF-7	breast:
11	chr11:63448233..63451551-chr11:63578408..63582128,5	K562	blood:
12	chr11:63532131..63538052-chr11:63579345..63585604,10	K562	blood:
13	chr11:63580615..63581131-chr19:49468375..49469008,2	Hela-S3	cervix:
14	chr11:63436319..63439202-chr11:63579775..63581446,2	MCF-7	breast:
15	chr11:63580176..63582428-chr11:63682563..63684680,2	K562	blood:
16	chr11:63532069..63539323-chr11:63579489..63583130,14	MCF-7	breast:
17	chr11:63579430..63582335-chr11:63993670..63995611,2	K562	blood:
18	chr11:62520403..62522717-chr11:63579678..63581641,2	MCF-7	breast:
19	chr11:63579621..63581291-chr11:63753774..63755303,2	MCF-7	breast:
20	chr11:63579552..63583589-chr11:63604564..63608557,6	K562	blood:
21	chr11:63580373..63581171-chr20:62496104..62496766,2	HCT-116	colon:
22	chr11:63580678..63581483-chrX:19002609..19003358,2	Hela-S3	cervix:
23	chr11:63580299..63582440-chr11:63655697..63658299,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RCOR2-1	chr11:63580192-63580748	NONHSAT021909

Variant related genes	Relation type
C11orf84	TF binding region
ENSG00000044446	Chromatin interaction
ENSG00000133318	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000056097	Chromatin interaction
ENSG00000101150	Chromatin interaction
ENSG00000188070	Chromatin interaction
ENSG00000255651	Chromatin interaction
ENSG00000087086	Chromatin interaction
ENSG00000135945	Chromatin interaction
ENSG00000167770	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000149761	Chromatin interaction
ENSG00000149743	Chromatin interaction
ENSG00000185670	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000168005	Chromatin interaction
ENSG00000184743	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12278871	0.92[ASN][1000 genomes]
rs12285245	0.92[ASN][1000 genomes]
rs12291587	1.00[ASN][1000 genomes]
rs2957205	1.00[ASN][1000 genomes]
rs2959885	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3016160	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3740635	0.92[ASN][1000 genomes]
rs510804	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs547526	0.80[AFR][1000 genomes]
rs580155	0.92[ASN][1000 genomes]
rs598301	0.92[ASN][1000 genomes]
rs623539	1.00[ASN][1000 genomes]
rs73492249	0.92[ASN][1000 genomes]
rs73492251	0.92[ASN][1000 genomes]
rs73492252	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv3413647	chr11:63550425-63582789	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63579200-63581800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr11:63579400-63582200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr11:63579600-63581800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:63579800-63582600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr11:63580000-63580800	Flanking Active TSS	Dnd41	blood
6	chr11:63580000-63581800	Active TSS	Brain Substantia Nigra	brain
7	chr11:63580000-63582000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:63580000-63582000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:63580000-63582000	Active TSS	Fetal Kidney	kidney
10	chr11:63580000-63582000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr11:63580000-63582200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:63580200-63580800	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr11:63580200-63580800	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr11:63580200-63580800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr11:63580200-63580800	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr11:63580200-63580800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr11:63580200-63580800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr11:63580200-63580800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr11:63580200-63580800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr11:63580200-63580800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:63580200-63580800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:63580200-63580800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:63580200-63580800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr11:63580200-63580800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr11:63580200-63580800	Flanking Active TSS	Colonic Mucosa	Colon
26	chr11:63580200-63580800	Flanking Active TSS	Fetal Muscle Trunk	muscle
27	chr11:63580200-63580800	Flanking Active TSS	Fetal Muscle Leg	muscle
28	chr11:63580200-63580800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr11:63580200-63581600	Active TSS	Psoas Muscle	Psoas
30	chr11:63580200-63582000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:63580200-63582200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:63580200-63582200	Active TSS	HepG2	liver
33	chr11:63580200-63582600	Active TSS	Right Atrium	heart
34	chr11:63580400-63580800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
35	chr11:63580400-63580800	Flanking Active TSS	Liver	Liver
36	chr11:63580400-63580800	Flanking Active TSS	Placenta	Placenta
37	chr11:63580400-63580800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
38	chr11:63580400-63581800	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr11:63580400-63581800	Active TSS	Aorta	Aorta
40	chr11:63580400-63581800	Active TSS	Brain Angular Gyrus	brain
41	chr11:63580400-63581800	Active TSS	Brain Anterior Caudate	brain
42	chr11:63580400-63581800	Active TSS	Brain Hippocampus Middle	brain
43	chr11:63580400-63581800	Active TSS	Fetal Brain Female	brain
44	chr11:63580400-63581800	Active TSS	Rectal Smooth Muscle	rectum
45	chr11:63580400-63582000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:63580400-63582000	Active TSS	Fetal Heart	heart
47	chr11:63580400-63582000	Active TSS	Gastric	stomach
48	chr11:63580400-63582200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:63580400-63582200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:63580400-63582200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links