Variant report

Variant	rs7113974
Chromosome Location	chr11:71626089-71626090
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10898679	1.00[CHB][hapmap]
rs17161701	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161942	1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2276383	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2276385	1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs34075366	0.92[EUR][1000 genomes]
rs35501875	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35844388	0.87[EUR][1000 genomes]
rs3750913	0.87[EUR][1000 genomes]
rs3750914	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3763797	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs55743841	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55815017	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55938043	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55992367	0.87[EUR][1000 genomes]
rs57119231	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57162500	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5743658	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs57637306	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60057760	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60165720	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60857568	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61745941	0.87[EUR][1000 genomes]
rs7111712	0.96[EUR][1000 genomes]
rs72477716	0.92[EUR][1000 genomes]
rs73527732	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73544108	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9667883	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv2758276	chr11:71363639-71657576	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv2759836	chr11:71363639-71657576	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71587400-71627400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:71591400-71638200	Weak transcription	Right Ventricle	heart
3	chr11:71600000-71635800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:71601000-71626600	Weak transcription	Pancreas	Pancrea
5	chr11:71604800-71626600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:71606000-71626800	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:71606600-71638200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:71612800-71626600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:71612800-71626800	Weak transcription	HSMMtube	muscle
10	chr11:71612800-71639000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:71613000-71626600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:71613000-71626600	Weak transcription	Osteobl	bone
13	chr11:71613400-71627000	Weak transcription	Esophagus	oesophagus
14	chr11:71613800-71626800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:71614400-71638200	Weak transcription	Fetal Brain Male	brain
16	chr11:71614600-71638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:71614800-71626600	Weak transcription	K562	blood
18	chr11:71615200-71638600	Weak transcription	HUVEC	blood vessel
19	chr11:71615400-71626600	Weak transcription	Brain Substantia Nigra	brain
20	chr11:71616800-71626800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:71616800-71626800	Weak transcription	Psoas Muscle	Psoas
22	chr11:71616800-71626800	Weak transcription	GM12878-XiMat	blood
23	chr11:71617400-71626600	Weak transcription	Hela-S3	cervix
24	chr11:71617400-71626800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:71618400-71626400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:71621000-71630000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:71621200-71630200	Strong transcription	Fetal Stomach	stomach
28	chr11:71621600-71626800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:71621600-71630200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:71621600-71630400	Strong transcription	Primary T cells from cord blood	blood
31	chr11:71621800-71630000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:71621800-71630000	Strong transcription	Fetal Muscle Leg	muscle
33	chr11:71621800-71630200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:71622000-71626800	Weak transcription	Brain Angular Gyrus	brain
35	chr11:71622200-71626600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:71622400-71630200	Strong transcription	Thymus	Thymus
37	chr11:71622600-71626600	Weak transcription	HepG2	liver
38	chr11:71622800-71626800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:71622800-71627800	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr11:71622800-71629800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr11:71622800-71630000	Strong transcription	Adipose Nuclei	Adipose
42	chr11:71622800-71630200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:71622800-71630200	Strong transcription	Fetal Lung	lung
44	chr11:71622800-71638200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:71623000-71626600	Weak transcription	Fetal Brain Female	brain
46	chr11:71623000-71628000	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr11:71623000-71628800	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:71623000-71629200	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr11:71623000-71630000	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:71623000-71630000	Strong transcription	Lung	lung

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