Variant report

Variant	rs7115649
Chromosome Location	chr11:9582124-9582125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10840260	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11042422	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6486426	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7108372	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7115691	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7480266	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv971928	chr11:9561378-9586236	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:9550600-9586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:9551400-9582600	Weak transcription	Primary T cells from cord blood	blood
4	chr11:9557400-9584400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:9566400-9587400	Weak transcription	Psoas Muscle	Psoas
6	chr11:9569600-9584400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:9573600-9582400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:9573600-9584200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:9573800-9584800	Weak transcription	Left Ventricle	heart
10	chr11:9573800-9585000	Weak transcription	Lung	lung
11	chr11:9573800-9586000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:9573800-9586600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:9573800-9586600	Weak transcription	Pancreas	Pancrea
14	chr11:9573800-9587800	Weak transcription	Gastric	stomach
15	chr11:9577000-9584400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:9579000-9590200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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