Variant report
| Variant | rs7115824 |
|---|---|
| Chromosome Location | chr11:93727165-93727166 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:17)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:17 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ZNF143 | chr11:93726996-93727196 | GM12878 | blood: | n/a | n/a |
| 2 | E2F4 | chr11:93727099-93727211 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | KAP1 | chr11:93726633-93727514 | K562 | blood: | n/a | n/a |
| 4 | ZNF143 | chr11:93726949-93727261 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | ZNF274 | chr11:93726911-93727479 | K562 | blood: | n/a | n/a |
| 6 | KAP1 | chr11:93726771-93727375 | HEK293 | kidney: | n/a | n/a |
| 7 | CBX3 | chr11:93726921-93727267 | K562 | blood: | n/a | n/a |
| 8 | CEBPB | chr11:93727075-93727168 | K562 | blood: | n/a | n/a |
| 9 | JUN | chr11:93726952-93727179 | K562 | blood: | n/a | n/a |
| 10 | NFYB | chr11:93727120-93727316 | Hela-S3 | cervix: | n/a | n/a |
| 11 | ARID3A | chr11:93727028-93727190 | K562 | blood: | n/a | n/a |
| 12 | CBX3 | chr11:93726833-93727334 | HCT-116 | colon: | n/a | n/a |
| 13 | CBX3 | chr11:93726896-93727284 | K562 | blood: | n/a | n/a |
| 14 | KAP1 | chr11:93726923-93727371 | U2OS | brain: | n/a | n/a |
| 15 | SETDB1 | chr11:93726594-93727391 | U2OS | brain: | n/a | n/a |
| 16 | RFX5 | chr11:93727016-93727290 | K562 | blood: | n/a | n/a |
| 17 | ZNF143 | chr11:93726947-93727248 | K562 | blood: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:93718444..93721972-chr11:93724685..93727460,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| HPRTP4 | TF binding region |
rSNPs within LD-proxies of this variant (count:2)
| rs_ID | r2[population] |
|---|---|
| rs16919665 | 1.00[EUR][1000 genomes] |
| rs16919687 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049467 | chr11:93651025-93778717 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv555965 | chr11:93713911-93747735 | Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv898183 | chr11:93725384-93906735 | Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
