Variant report

Variant	rs7116486
Chromosome Location	chr11:63364856-63364857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2959880	0.83[CEU][hapmap]
rs3934131	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4405320	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56364222	0.97[EUR][1000 genomes]
rs568790	0.84[CEU][hapmap]
rs7944240	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63343000-63366200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:63343000-63376600	Weak transcription	Colonic Mucosa	Colon
3	chr11:63347800-63370200	Weak transcription	Psoas Muscle	Psoas
4	chr11:63348400-63366600	Weak transcription	HSMM	muscle
5	chr11:63350000-63375800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:63350200-63366800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:63350200-63370000	Weak transcription	Small Intestine	intestine
8	chr11:63350200-63377000	Weak transcription	Hela-S3	cervix
9	chr11:63350800-63365600	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:63351800-63366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:63352600-63367000	Strong transcription	H9 Cell Line	embryonic stem cell
12	chr11:63353400-63366200	Weak transcription	A549	lung
13	chr11:63354000-63366000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:63355200-63365800	Strong transcription	Lung	lung
15	chr11:63355200-63366200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:63355400-63366200	Strong transcription	Liver	Liver
17	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:63357200-63366400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:63357200-63369600	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:63357600-63380400	Weak transcription	NHLF	lung
21	chr11:63357800-63370200	Weak transcription	Pancreas	Pancrea
22	chr11:63357800-63374200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:63358400-63365200	Weak transcription	Aorta	Aorta
24	chr11:63358400-63369800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:63358600-63365400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:63358600-63366600	Weak transcription	Spleen	Spleen
27	chr11:63358600-63370600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:63358800-63377000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:63359600-63375800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:63360200-63365000	Weak transcription	Right Ventricle	heart
31	chr11:63360600-63366200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:63361000-63366200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:63361000-63369400	Weak transcription	Fetal Stomach	stomach
34	chr11:63361200-63376800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr11:63361600-63365200	Strong transcription	Adipose Nuclei	Adipose
36	chr11:63361600-63373200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:63362000-63378000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:63362400-63365200	Weak transcription	Ovary	ovary
39	chr11:63362800-63366400	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr11:63362800-63366600	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:63363000-63365600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:63363000-63365800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:63363000-63365800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:63363000-63366400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr11:63363000-63377000	Weak transcription	Esophagus	oesophagus
46	chr11:63363200-63365000	Strong transcription	Brain Cingulate Gyrus	brain
47	chr11:63363200-63365200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:63363200-63366400	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:63363200-63369600	Weak transcription	HSMMtube	muscle
50	chr11:63363400-63365000	Strong transcription	Brain Hippocampus Middle	brain

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