Variant report

Variant	rs7944240
Chromosome Location	chr11:63363902-63363903
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3934131	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4405320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56364222	0.93[EUR][1000 genomes]
rs61929725	0.85[AFR][1000 genomes]
rs7116486	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63343000-63366200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:63343000-63376600	Weak transcription	Colonic Mucosa	Colon
3	chr11:63347800-63370200	Weak transcription	Psoas Muscle	Psoas
4	chr11:63348400-63366600	Weak transcription	HSMM	muscle
5	chr11:63350000-63375800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:63350200-63366800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:63350200-63370000	Weak transcription	Small Intestine	intestine
8	chr11:63350200-63377000	Weak transcription	Hela-S3	cervix
9	chr11:63350800-63365600	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:63351000-63364200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:63351800-63366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:63352600-63367000	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr11:63353200-63364000	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:63353400-63366200	Weak transcription	A549	lung
15	chr11:63354000-63366000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:63355200-63365800	Strong transcription	Lung	lung
17	chr11:63355200-63366200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:63355400-63366200	Strong transcription	Liver	Liver
19	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:63357200-63366400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:63357200-63369600	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:63357600-63380400	Weak transcription	NHLF	lung
23	chr11:63357800-63370200	Weak transcription	Pancreas	Pancrea
24	chr11:63357800-63374200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:63358200-63364000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:63358400-63365200	Weak transcription	Aorta	Aorta
27	chr11:63358400-63369800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:63358600-63365400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:63358600-63366600	Weak transcription	Spleen	Spleen
30	chr11:63358600-63370600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:63358800-63377000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:63359600-63375800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:63360200-63365000	Weak transcription	Right Ventricle	heart
34	chr11:63360600-63366200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:63361000-63366200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:63361000-63369400	Weak transcription	Fetal Stomach	stomach
37	chr11:63361200-63376800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:63361600-63365200	Strong transcription	Adipose Nuclei	Adipose
39	chr11:63361600-63373200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:63362000-63364000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:63362000-63378000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:63362400-63365200	Weak transcription	Ovary	ovary
43	chr11:63362800-63364000	Strong transcription	Placenta	Placenta
44	chr11:63362800-63364400	Strong transcription	Left Ventricle	heart
45	chr11:63362800-63366400	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr11:63362800-63366600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:63363000-63365600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:63363000-63365800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:63363000-63365800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:63363000-63366400	Strong transcription	Stomach Smooth Muscle	stomach

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