Variant report

Variant	rs7117667
Chromosome Location	chr11:94216878-94216879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94210098..94212202-chr11:94216700..94218600,2	K562	blood:
2	chr11:94213824..94217124-chr11:94225921..94227775,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168876	Chromatin interaction
ENSG00000020922	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13447605	1.00[AMR][1000 genomes]
rs13447729	1.00[AMR][1000 genomes]
rs13447738	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs58458706	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58502184	1.00[AMR][1000 genomes]
rs59738863	1.00[AMR][1000 genomes]
rs60569310	1.00[AMR][1000 genomes]
rs61001173	1.00[AMR][1000 genomes]
rs61124264	1.00[AMR][1000 genomes]
rs7105025	1.00[AMR][1000 genomes]
rs7119572	1.00[AMR][1000 genomes]
rs73512494	1.00[AMR][1000 genomes]
rs73515391	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521554	1.00[AMR][1000 genomes]
rs73521558	1.00[AMR][1000 genomes]
rs73521559	1.00[AMR][1000 genomes]
rs73521567	1.00[AMR][1000 genomes]
rs73525678	1.00[AMR][1000 genomes]
rs7949265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv1797582	chr11:94182992-94227993	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv1800372	chr11:94182992-94227993	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94157400-94226200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:94157600-94226400	Weak transcription	Esophagus	oesophagus
3	chr11:94162800-94225800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:94163400-94221000	Weak transcription	Psoas Muscle	Psoas
5	chr11:94167400-94226400	Weak transcription	Small Intestine	intestine
6	chr11:94178400-94221600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:94179000-94226000	Weak transcription	Colonic Mucosa	Colon
8	chr11:94180000-94217600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:94180600-94225800	Weak transcription	Brain Substantia Nigra	brain
10	chr11:94181000-94226400	Weak transcription	Pancreas	Pancrea
11	chr11:94183200-94222200	Weak transcription	HMEC	breast
12	chr11:94183600-94219800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:94183600-94225800	Weak transcription	NHLF	lung
14	chr11:94184400-94225800	Weak transcription	NHDF-Ad	bronchial
15	chr11:94194000-94217400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:94194600-94221200	Weak transcription	Right Ventricle	heart
17	chr11:94194600-94225000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:94194600-94225000	Weak transcription	Fetal Brain Male	brain
19	chr11:94197200-94222600	Strong transcription	Dnd41	blood
20	chr11:94197400-94224600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:94197600-94225600	Weak transcription	Fetal Heart	heart
22	chr11:94198400-94224400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr11:94198800-94223800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:94199800-94222400	Weak transcription	NHEK	skin
25	chr11:94203000-94225800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:94205000-94224000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:94205800-94224000	Strong transcription	Liver	Liver
28	chr11:94206400-94217600	Weak transcription	NH-A	brain
29	chr11:94206600-94217400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr11:94206600-94225800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:94206600-94226000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr11:94206800-94217200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:94206800-94217200	Weak transcription	A549	lung
34	chr11:94206800-94219600	Weak transcription	HUVEC	blood vessel
35	chr11:94206800-94226000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:94207400-94224000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:94207600-94221400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:94208000-94224000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:94208000-94224600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:94208000-94225600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr11:94208200-94223800	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr11:94208400-94222400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:94208600-94224000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:94208800-94223800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:94209000-94223800	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:94210200-94226200	Weak transcription	Aorta	Aorta
47	chr11:94210600-94218400	Strong transcription	Fetal Intestine Large	intestine
48	chr11:94211200-94224000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr11:94211200-94226200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:94211800-94218200	Strong transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links