Variant report

Variant	rs7120125
Chromosome Location	chr11:3941264-3941265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr11:3941185-3941721	HCT-116	colon:	n/a	chr11:3941469-3941480
2	FOS	chr11:3940613-3941875	MCF10A-Er-Src	breast:	n/a	chr11:3940782-3940793 chr11:3940783-3940793 chr11:3940783-3940792 chr11:3940783-3940793
3	JUN	chr11:3940684-3942172	K562	blood:	n/a	chr11:3940783-3940793 chr11:3940783-3940792 chr11:3940783-3940793
4	JUND	chr11:3941177-3941788	HCT-116	colon:	n/a	n/a
5	POLR2A	chr11:3941255-3941926	U87	brain:	n/a	n/a
6	RUNX3	chr11:3941213-3941812	GM12878	blood:	n/a	n/a
7	CEBPB	chr11:3941193-3941763	HCT-116	colon:	n/a	n/a
8	CEBPB	chr11:3941178-3941891	HCT-116	colon:	n/a	n/a
9	JUND	chr11:3941176-3941736	HCT-116	colon:	n/a	n/a
10	FOSL1	chr11:3941207-3941594	K562	blood:	n/a	chr11:3941469-3941480
11	FOSL1	chr11:3941172-3941726	HCT-116	colon:	n/a	chr11:3941469-3941480
12	FOS	chr11:3940613-3941707	MCF10A-Er-Src	breast:	n/a	chr11:3940782-3940793 chr11:3940783-3940793 chr11:3940783-3940792 chr11:3940783-3940793
13	ATF2	chr11:3941225-3941691	GM12878	blood:	n/a	n/a
14	JUND	chr11:3941139-3941904	K562	blood:	n/a	n/a
15	POLR2A	chr11:3941255-3941954	U87	brain:	n/a	n/a
16	SP1	chr11:3941171-3941729	HCT-116	colon:	n/a	n/a
17	FOS	chr11:3940624-3941472	HUVEC	blood vessel:	n/a	chr11:3940782-3940793 chr11:3940783-3940793 chr11:3940783-3940792 chr11:3940783-3940793

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:3941075..3943493-chr11:3946471..3948853,2	K562	blood:

Variant related genes	Relation type
ENSG00000206976	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2923950	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv869701	chr11:3879297-3973762	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1043039	chr11:3903226-3955159	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7120125	RRM1	cis	Artery Tibial	GTEx

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3916600-3943800	Weak transcription	Fetal Stomach	stomach
2	chr11:3916600-3948800	Weak transcription	Aorta	Aorta
3	chr11:3924000-3950600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:3927200-3942600	Weak transcription	Spleen	Spleen
5	chr11:3927600-3943600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:3929400-3950600	Weak transcription	Ovary	ovary
7	chr11:3931600-3942600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:3932200-3942800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:3932400-3944000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:3934800-3951000	Weak transcription	Gastric	stomach
11	chr11:3935400-3942400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr11:3935400-3943000	Weak transcription	Fetal Lung	lung
13	chr11:3935400-3944000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:3935600-3942600	Enhancers	Primary B cells from peripheral blood	blood
15	chr11:3935600-3943200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr11:3935600-3943400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:3936000-3942000	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr11:3936000-3943200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr11:3936000-3943600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr11:3937400-3942000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr11:3937800-3950600	Weak transcription	Lung	lung
22	chr11:3938400-3956400	Weak transcription	Dnd41	blood
23	chr11:3938600-3949800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:3939000-3941400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:3939000-3950200	Weak transcription	Left Ventricle	heart
26	chr11:3939000-3950200	Weak transcription	Pancreas	Pancrea
27	chr11:3939000-3956000	Weak transcription	Esophagus	oesophagus
28	chr11:3939200-3942200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:3939400-3942000	Enhancers	Primary T cells from cord blood	blood
30	chr11:3939400-3947200	Weak transcription	Liver	Liver
31	chr11:3939600-3947800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:3939600-3948800	Weak transcription	Thymus	Thymus
33	chr11:3939600-3950000	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:3939600-3950200	Weak transcription	Fetal Thymus	thymus
35	chr11:3939800-3941400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:3939800-3942000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr11:3940000-3947400	Weak transcription	Psoas Muscle	Psoas
38	chr11:3940200-3942200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:3940200-3947800	Weak transcription	HepG2	liver
40	chr11:3940400-3942000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:3940600-3942000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:3940600-3942000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr11:3940800-3941400	Enhancers	Placenta Amnion	Placenta Amnion
44	chr11:3940800-3941600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr11:3940800-3941600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:3940800-3941600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:3940800-3941600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:3940800-3941600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:3940800-3941600	Enhancers	Stomach Mucosa	stomach
50	chr11:3940800-3941600	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links