Variant report

Variant	rs7120156
Chromosome Location	chr11:72532133-72532134
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:72531476-72538712	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:72531956-72532421	GM12892	blood:	n/a	n/a
3	POLR2A	chr11:72531655-72533182	HL-60	blood:	n/a	n/a
4	POLR2A	chr11:72531996-72532377	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:72531526-72538707	GM12892	blood:	n/a	n/a
6	POLR2A	chr11:72531677-72538557	GM18505	blood:	n/a	n/a
7	POLR2A	chr11:72532115-72534355	SK-N-MC	brain:	n/a	n/a
8	POLR2A	chr11:72531780-72532602	GM12891	blood:	n/a	n/a
9	POLR2A	chr11:72531497-72532504	GM12891	blood:	n/a	n/a
10	POLR2A	chr11:72531710-72538560	GM19193	blood:	n/a	n/a
11	POLR2A	chr11:72531858-72532793	GM12878	blood:	n/a	n/a
12	POLR2A	chr11:72532103-72532261	K562	blood:	n/a	n/a
13	POLR2A	chr11:72531772-72534846	GM12878	blood:	n/a	n/a
14	POLR2A	chr11:72531477-72538223	GM12891	blood:	n/a	n/a
15	POLR2A	chr11:72531489-72532432	GM12878	blood:	n/a	n/a
16	POLR2A	chr11:72532009-72532239	K562	blood:	n/a	n/a
17	POLR2A	chr11:72532064-72532235	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr11:72531771-72532395	GM12878	blood:	n/a	n/a
19	POLR2A	chr11:72531499-72538634	GM12892	blood:	n/a	n/a
20	POLR2A	chr11:72531503-72532605	GM12892	blood:	n/a	n/a
21	POLR2A	chr11:72531557-72533865	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72390946..72393095-chr11:72530175..72532739,2	K562	blood:
2	chr11:72487526..72509577-chr11:72522325..72536312,93	MCF-7	breast:
3	chr11:72531883..72535504-chr11:72851629..72853807,3	MCF-7	breast:
4	chr11:72490888..72493672-chr11:72531359..72534461,3	MCF-7	breast:
5	chr11:72532014..72534900-chr11:72852286..72855205,3	K562	blood:

No data

Variant related genes	Relation type
ATG16L2	TF binding region
ENSG00000186635	Chromatin interaction
ENSG00000137478	Chromatin interaction
ENSG00000214530	Chromatin interaction
ENSG00000265064	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1864651	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs891655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72526200-72532800	Weak transcription	Aorta	Aorta
2	chr11:72526400-72532800	Weak transcription	Fetal Kidney	kidney
3	chr11:72526600-72532200	Weak transcription	A549	lung
4	chr11:72526600-72532400	Weak transcription	Psoas Muscle	Psoas
5	chr11:72526600-72532600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:72526800-72532400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:72527000-72532200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:72527000-72532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:72527000-72532200	Weak transcription	Small Intestine	intestine
10	chr11:72527000-72532200	Weak transcription	Hela-S3	cervix
11	chr11:72527000-72532400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:72527600-72532200	Weak transcription	NHDF-Ad	bronchial
13	chr11:72527600-72532600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:72527800-72532200	Weak transcription	NH-A	brain
15	chr11:72527800-72532200	Weak transcription	Osteobl	bone
16	chr11:72527800-72532400	Weak transcription	Brain Substantia Nigra	brain
17	chr11:72527800-72532800	Weak transcription	HSMMtube	muscle
18	chr11:72528000-72532400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:72528000-72532600	Weak transcription	HSMM	muscle
20	chr11:72528800-72532600	Strong transcription	Thymus	Thymus
21	chr11:72528800-72533800	Genic enhancers	Monocytes-CD14+_RO01746	blood
22	chr11:72528800-72534400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
23	chr11:72528800-72542800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:72529000-72532200	Strong transcription	Primary hematopoietic stem cells	blood
25	chr11:72529000-72543600	Strong transcription	Dnd41	blood
26	chr11:72529600-72532200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:72529800-72532400	Weak transcription	HUVEC	blood vessel
28	chr11:72529800-72532600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:72530200-72532200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:72530200-72532200	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:72530200-72532200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:72530400-72532200	Weak transcription	Fetal Lung	lung
33	chr11:72530400-72532200	Weak transcription	HepG2	liver
34	chr11:72530400-72532200	Weak transcription	NHLF	lung
35	chr11:72530400-72532400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:72530600-72532600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:72530800-72532200	Weak transcription	Liver	Liver
38	chr11:72530800-72532200	Weak transcription	Colon Smooth Muscle	Colon
39	chr11:72531400-72532200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:72531400-72532800	Genic enhancers	Primary B cells from cord blood	blood
41	chr11:72531400-72532800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
42	chr11:72531600-72532200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr11:72531600-72532200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:72531600-72532200	Genic enhancers	Colonic Mucosa	Colon
45	chr11:72531600-72532200	Enhancers	Fetal Brain Female	brain
46	chr11:72531600-72532400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
47	chr11:72531600-72532400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:72531600-72532400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:72531600-72532400	Genic enhancers	Esophagus	oesophagus
50	chr11:72531600-72532400	Genic enhancers	Fetal Intestine Large	intestine

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