Variant report

Variant	rs891655
Chromosome Location	chr11:72528973-72528974
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:72528507-72529010	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:72528607-72529527	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:72528874-72529046	GM12878	blood:	n/a	n/a
4	POLR2A	chr11:72528960-72529096	HepG2	liver:	n/a	n/a
5	POLR2A	chr11:72528760-72529508	GM12892	blood:	n/a	n/a
6	POLR2A	chr11:72528971-72529052	HepG2	liver:	n/a	n/a
7	POLR2A	chr11:72528890-72529424	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72451237..72453467-chr11:72528807..72531708,2	K562	blood:
2	chr11:72487526..72509577-chr11:72522325..72536312,93	MCF-7	breast:

Variant related genes	Relation type
ATG16L2	TF binding region
ENSG00000214530	Chromatin interaction
ENSG00000265064	Chromatin interaction
ENSG00000186635	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1864651	1.00[AMR][1000 genomes]
rs7120156	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72526200-72532800	Weak transcription	Aorta	Aorta
2	chr11:72526400-72529000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:72526400-72529000	Weak transcription	Gastric	stomach
4	chr11:72526400-72531600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:72526400-72531600	Weak transcription	Fetal Brain Female	brain
6	chr11:72526400-72532800	Weak transcription	Fetal Kidney	kidney
7	chr11:72526600-72532000	Weak transcription	Fetal Brain Male	brain
8	chr11:72526600-72532200	Weak transcription	A549	lung
9	chr11:72526600-72532400	Weak transcription	Psoas Muscle	Psoas
10	chr11:72526600-72532600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:72526800-72530200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:72526800-72532000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:72526800-72532000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:72526800-72532400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:72527000-72529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:72527000-72531600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:72527000-72532000	Weak transcription	Brain Germinal Matrix	brain
18	chr11:72527000-72532000	Weak transcription	Right Atrium	heart
19	chr11:72527000-72532200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:72527000-72532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:72527000-72532200	Weak transcription	Small Intestine	intestine
22	chr11:72527000-72532200	Weak transcription	Hela-S3	cervix
23	chr11:72527000-72532400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:72527400-72529000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:72527400-72529200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:72527400-72529200	Genic enhancers	Spleen	Spleen
27	chr11:72527600-72529200	Weak transcription	Fetal Lung	lung
28	chr11:72527600-72529600	Genic enhancers	Primary T cells fromperipheralblood	blood
29	chr11:72527600-72531600	Weak transcription	Fetal Heart	heart
30	chr11:72527600-72531600	Weak transcription	Pancreas	Pancrea
31	chr11:72527600-72531800	Strong transcription	Fetal Intestine Small	intestine
32	chr11:72527600-72532200	Weak transcription	NHDF-Ad	bronchial
33	chr11:72527600-72532600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:72527800-72529000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:72527800-72529000	Weak transcription	Adipose Nuclei	Adipose
36	chr11:72527800-72529000	Genic enhancers	Dnd41	blood
37	chr11:72527800-72529000	Weak transcription	HUVEC	blood vessel
38	chr11:72527800-72529200	Genic enhancers	Primary T cells from cord blood	blood
39	chr11:72527800-72529200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:72527800-72529600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:72527800-72530400	Strong transcription	Esophagus	oesophagus
42	chr11:72527800-72531000	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:72527800-72531800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:72527800-72531800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:72527800-72531800	Weak transcription	Left Ventricle	heart
46	chr11:72527800-72531800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:72527800-72531800	Strong transcription	Stomach Smooth Muscle	stomach
48	chr11:72527800-72532000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:72527800-72532000	Weak transcription	Brain Anterior Caudate	brain
50	chr11:72527800-72532000	Weak transcription	Stomach Mucosa	stomach

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