Variant report

Variant	rs7121098
Chromosome Location	chr11:93576526-93576527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16919267	1.00[AMR][1000 genomes]
rs2298706	1.00[AMR][1000 genomes]
rs34380494	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3737461	1.00[AMR][1000 genomes]
rs55734478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55841047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57824239	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58142073	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58451343	1.00[AMR][1000 genomes]
rs59010425	1.00[AMR][1000 genomes]
rs60059131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60264207	1.00[AMR][1000 genomes]
rs61276777	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61498518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111872	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129028	1.00[AMR][1000 genomes]
rs7129313	1.00[AMR][1000 genomes]
rs7937088	1.00[AMR][1000 genomes]
rs7951514	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93566200-93577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:93570400-93579200	Enhancers	Stomach Mucosa	stomach
3	chr11:93572600-93582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:93573200-93577000	Weak transcription	Placenta	Placenta
5	chr11:93574200-93577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:93574400-93582800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:93574800-93579800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:93575200-93576600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:93575800-93577200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:93575800-93577200	Weak transcription	NHDF-Ad	bronchial
11	chr11:93575800-93578200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:93575800-93578200	Weak transcription	HSMMtube	muscle
13	chr11:93575800-93578400	Weak transcription	Osteobl	bone
14	chr11:93575800-93582600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:93575800-93582800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:93576000-93578000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:93576000-93578200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:93576000-93578200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:93576200-93577400	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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