Variant report

Variant	rs59010425
Chromosome Location	chr11:93461222-93461223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:93459822..93462778-chr11:93509047..93511510,2	K562	blood:
2	chr11:93461073..93462615-chr11:93516480..93518625,2	MCF-7	breast:
3	chr11:93459100..93466497-chr11:93514555..93520746,14	K562	blood:
4	chr11:93456003..93458881-chr11:93460219..93462347,2	MCF-7	breast:
5	chr11:93458749..93462343-chr11:93515783..93520848,6	K562	blood:
6	chr11:93460575..93462984-chr11:93526258..93528931,2	K562	blood:
7	chr11:93461112..93461952-chr6:27860440..27861039,2	NB4	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAF1D-1	chr11:93459820-93462971	NONHSAT023660

No data

Variant related genes	Relation type
ENSG00000166004	Chromatin interaction
ENSG00000166012	Chromatin interaction
ENSG00000042429	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16919267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2298706	1.00[AMR][1000 genomes]
rs34380494	1.00[AMR][1000 genomes]
rs3737461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55734478	1.00[AMR][1000 genomes]
rs55841047	1.00[AMR][1000 genomes]
rs56899998	1.00[AFR][1000 genomes]
rs57546530	1.00[AFR][1000 genomes]
rs57824239	1.00[AMR][1000 genomes]
rs58142073	1.00[AMR][1000 genomes]
rs58451343	1.00[AMR][1000 genomes]
rs60059131	1.00[AMR][1000 genomes]
rs60264207	1.00[AMR][1000 genomes]
rs61276777	1.00[AMR][1000 genomes]
rs61498518	1.00[AMR][1000 genomes]
rs7111872	1.00[AMR][1000 genomes]
rs7121098	1.00[AMR][1000 genomes]
rs7129028	1.00[AMR][1000 genomes]
rs7129313	1.00[AMR][1000 genomes]
rs7937088	1.00[AMR][1000 genomes]
rs7951514	1.00[AMR][1000 genomes]
rs7952323	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93427000-93465800	Strong transcription	Hela-S3	cervix
2	chr11:93430800-93465400	Weak transcription	Stomach Mucosa	stomach
3	chr11:93442000-93463200	Weak transcription	Colonic Mucosa	Colon
4	chr11:93444000-93466400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:93444200-93462200	Weak transcription	Psoas Muscle	Psoas
6	chr11:93444800-93471000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:93445400-93465200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:93447600-93468000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:93448000-93465600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:93448600-93461400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:93448600-93465400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:93449000-93462200	Weak transcription	Small Intestine	intestine
13	chr11:93449200-93462400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:93449200-93471800	Weak transcription	Right Atrium	heart
15	chr11:93449400-93461600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:93449400-93463800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:93449400-93465400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:93449600-93462200	Weak transcription	Spleen	Spleen
19	chr11:93449600-93462400	Weak transcription	Right Ventricle	heart
20	chr11:93449600-93471800	Weak transcription	Esophagus	oesophagus
21	chr11:93450000-93462200	Weak transcription	Pancreas	Pancrea
22	chr11:93450200-93461600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:93450600-93471800	Weak transcription	Gastric	stomach
24	chr11:93450600-93473000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:93451600-93469800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:93451600-93470800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:93451800-93461800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:93451800-93462000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:93451800-93466800	Strong transcription	Dnd41	blood
30	chr11:93452000-93461600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:93452000-93462000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:93453200-93468000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:93453400-93465200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr11:93453600-93468000	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr11:93453800-93465200	Strong transcription	Fetal Intestine Large	intestine
36	chr11:93453800-93471200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:93453800-93471800	Strong transcription	Fetal Muscle Leg	muscle
38	chr11:93453800-93471800	Strong transcription	Fetal Thymus	thymus
39	chr11:93453800-93472400	Strong transcription	Fetal Muscle Trunk	muscle
40	chr11:93454000-93470400	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:93454200-93467000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:93454400-93467800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:93454400-93469000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:93454400-93469400	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:93454400-93469600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:93454400-93469800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:93454400-93470000	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:93454400-93470800	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:93454400-93471000	Strong transcription	Fetal Lung	lung
50	chr11:93454600-93471000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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