Variant report

Variant	rs7121160
Chromosome Location	chr11:8828414-8828415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8827149..8829298-chr11:8831731..8833459,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10219216	0.91[YRI][hapmap]
rs10219217	0.91[YRI][hapmap]
rs3850931	0.90[YRI][hapmap]
rs3850935	0.94[AFR][1000 genomes]
rs3850936	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3862353	0.87[AFR][1000 genomes]
rs4929917	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs4929939	0.91[YRI][hapmap]
rs6484547	0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7950108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv527920	chr11:8816695-8856822	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8809000-8830200	Weak transcription	Fetal Brain Male	brain
2	chr11:8809200-8829200	Weak transcription	Fetal Kidney	kidney
3	chr11:8811800-8828600	Weak transcription	Hela-S3	cervix
4	chr11:8811800-8828800	Weak transcription	Aorta	Aorta
5	chr11:8811800-8830400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:8811800-8830600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:8816400-8831800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:8816600-8828800	Weak transcription	Brain Substantia Nigra	brain
9	chr11:8816600-8830000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:8816600-8830600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:8816800-8828600	Weak transcription	Small Intestine	intestine
12	chr11:8817000-8828600	Weak transcription	Fetal Intestine Large	intestine
13	chr11:8817200-8828600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:8819800-8828600	Weak transcription	Osteobl	bone
15	chr11:8819800-8829800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:8821600-8830200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr11:8822200-8828600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:8823600-8828600	Enhancers	Stomach Mucosa	stomach
19	chr11:8824200-8830400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:8824600-8828600	Weak transcription	NH-A	brain
21	chr11:8825200-8828800	Enhancers	Brain Hippocampus Middle	brain
22	chr11:8825200-8829400	Enhancers	Right Ventricle	heart
23	chr11:8825400-8829400	Enhancers	Brain Cingulate Gyrus	brain
24	chr11:8825400-8829400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:8825400-8830400	Enhancers	Left Ventricle	heart
26	chr11:8825600-8828600	Genic enhancers	Fetal Stomach	stomach
27	chr11:8825600-8828600	Enhancers	Spleen	Spleen
28	chr11:8825600-8829600	Enhancers	Gastric	stomach
29	chr11:8826400-8828600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:8826400-8828600	Enhancers	Ovary	ovary
31	chr11:8826400-8829800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:8826400-8830600	Enhancers	Brain Angular Gyrus	brain
33	chr11:8826600-8828600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr11:8826600-8828600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr11:8826600-8828800	Enhancers	Brain Anterior Caudate	brain
36	chr11:8826600-8828800	Enhancers	Duodenum Mucosa	Duodenum
37	chr11:8826600-8828800	Enhancers	Right Atrium	heart
38	chr11:8826600-8830200	Enhancers	Pancreas	Pancrea
39	chr11:8827000-8828800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:8827000-8828800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:8827200-8828600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:8827200-8828600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:8827200-8828600	Enhancers	HSMMtube	muscle
44	chr11:8827200-8829200	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr11:8827400-8829000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:8827400-8829000	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr11:8827400-8830400	Enhancers	Psoas Muscle	Psoas
48	chr11:8827400-8831200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:8827600-8828600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:8827600-8828800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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