Variant report

Variant	rs10219217
Chromosome Location	chr11:8802649-8802650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8801841..8803945-chr11:8806888..8809278,2	MCF-7	breast:
2	chr11:8789292..8792139-chr11:8801689..8804373,2	K562	blood:

Variant related genes	Relation type
ENSG00000255159	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10219216	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12420300	0.82[AFR][1000 genomes]
rs1875567	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2055462	1.00[AMR][1000 genomes]
rs3850931	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3850932	1.00[AMR][1000 genomes]
rs4929913	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4929917	0.95[YRI][hapmap]
rs4929935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4929939	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57836157	1.00[AMR][1000 genomes]
rs6484547	0.90[YRI][hapmap]
rs7121160	0.91[YRI][hapmap]
rs73408030	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv553447	chr11:8792622-8825966	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8786600-8803000	Enhancers	Ovary	ovary
2	chr11:8788800-8808400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:8789400-8807600	Weak transcription	Fetal Kidney	kidney
4	chr11:8789600-8805800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:8791400-8810400	Weak transcription	Hela-S3	cervix
6	chr11:8794200-8803000	Enhancers	Left Ventricle	heart
7	chr11:8794600-8803000	Enhancers	Right Ventricle	heart
8	chr11:8795000-8809800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:8796200-8808000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:8797400-8808200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:8797800-8827200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:8798200-8808200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:8798200-8808400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:8798200-8810000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:8798400-8803200	Strong transcription	Liver	Liver
16	chr11:8798600-8807400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:8799400-8803000	Enhancers	Right Atrium	heart
18	chr11:8799600-8803200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:8799600-8807000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:8799800-8808200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:8800000-8802800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr11:8800200-8803200	Genic enhancers	NHLF	lung
23	chr11:8800400-8803000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:8800400-8808200	Weak transcription	Fetal Brain Male	brain
25	chr11:8800600-8802800	Genic enhancers	Colon Smooth Muscle	Colon
26	chr11:8800600-8807400	Weak transcription	Fetal Intestine Small	intestine
27	chr11:8800600-8808200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:8800600-8811400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:8800800-8802800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:8800800-8807000	Weak transcription	Gastric	stomach
31	chr11:8800800-8808600	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:8800800-8822400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:8800800-8825800	Weak transcription	Brain Angular Gyrus	brain
34	chr11:8800800-8827400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:8801000-8803200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:8801000-8808000	Weak transcription	Psoas Muscle	Psoas
37	chr11:8801000-8808400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:8801000-8808400	Weak transcription	HepG2	liver
39	chr11:8801000-8815600	Weak transcription	NHDF-Ad	bronchial
40	chr11:8801200-8805400	Weak transcription	Aorta	Aorta
41	chr11:8801200-8808400	Weak transcription	HMEC	breast
42	chr11:8801400-8806400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:8801400-8808200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:8801600-8803200	Enhancers	Rectal Smooth Muscle	rectum
45	chr11:8801600-8807000	Weak transcription	Lung	lung
46	chr11:8801600-8807000	Weak transcription	Stomach Mucosa	stomach
47	chr11:8801600-8808200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:8801600-8808200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr11:8801600-8820000	Weak transcription	HSMMtube	muscle
50	chr11:8801600-8827400	Weak transcription	Esophagus	oesophagus

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