Variant report

Variant	rs73408030
Chromosome Location	chr11:8621183-8621184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10219216	1.00[AMR][1000 genomes]
rs10219217	1.00[AMR][1000 genomes]
rs11828086	1.00[AMR][1000 genomes]
rs1875567	1.00[AMR][1000 genomes]
rs2055462	1.00[AMR][1000 genomes]
rs3850931	1.00[AMR][1000 genomes]
rs3850932	1.00[AMR][1000 genomes]
rs4929913	1.00[AMR][1000 genomes]
rs4929935	1.00[AMR][1000 genomes]
rs4929939	1.00[AMR][1000 genomes]
rs57836157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8616600-8625600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:8617000-8625400	Weak transcription	GM12878-XiMat	blood
3	chr11:8618400-8623000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:8619000-8622800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:8619000-8623000	Weak transcription	A549	lung
6	chr11:8619400-8622800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:8619600-8625200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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