The 2.0 version of rSNPBase

Variant report

Variant rs2055462
Chromosome Location chr11:8769593-8769594
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:8736200-8773800 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr11:8746600-8783000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr11:8752600-8769800 Weak transcription Colonic Mucosa Colon
4 chr11:8752600-8775200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr11:8753000-8780600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr11:8754600-8771000 Weak transcription Placenta Amnion Placenta Amnion
7 chr11:8754600-8778400 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr11:8755200-8771600 Weak transcription Hela-S3 cervix
9 chr11:8755200-8774200 Weak transcription Brain Angular Gyrus brain
10 chr11:8755200-8778200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr11:8755400-8770600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr11:8755600-8777200 Weak transcription Psoas Muscle Psoas
13 chr11:8755800-8770200 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr11:8755800-8780800 Weak transcription Brain Cingulate Gyrus brain
15 chr11:8756000-8776000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr11:8757400-8777400 Weak transcription Adipose Nuclei Adipose
17 chr11:8757800-8777800 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr11:8758400-8770600 Weak transcription Lung lung
19 chr11:8758600-8770800 Weak transcription Esophagus oesophagus
20 chr11:8759800-8775600 Weak transcription Muscle Satellite Cultured Cells --
21 chr11:8761400-8771800 Weak transcription Brain Substantia Nigra brain
22 chr11:8762000-8770800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr11:8762000-8778200 Weak transcription Aorta Aorta
24 chr11:8762200-8772200 Weak transcription Spleen Spleen
25 chr11:8762600-8770800 Weak transcription Gastric stomach
26 chr11:8762800-8778000 Weak transcription Ovary ovary
27 chr11:8763000-8770600 Weak transcription Right Ventricle heart
28 chr11:8763400-8769800 Weak transcription Rectal Smooth Muscle rectum
29 chr11:8763400-8769800 Weak transcription Right Atrium heart
30 chr11:8763400-8770000 Weak transcription Brain Anterior Caudate brain
31 chr11:8763400-8781000 Weak transcription Brain Inferior Temporal Lobe brain
32 chr11:8765200-8772400 Strong transcription Fetal Adrenal Gland Adrenal Gland
33 chr11:8765400-8772400 Strong transcription Fetal Muscle Trunk muscle
34 chr11:8766000-8772400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr11:8766400-8772400 Strong transcription Placenta Placenta
36 chr11:8766400-8772600 Genic enhancers Breast Myoepithelial Primary Cells Breast
37 chr11:8766600-8771400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr11:8767000-8779800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
39 chr11:8767200-8769600 Enhancers Fetal Intestine Small intestine
40 chr11:8767200-8769800 Enhancers Fetal Intestine Large intestine
41 chr11:8767200-8772600 Genic enhancers Stomach Smooth Muscle stomach
42 chr11:8767400-8770400 Weak transcription HSMM muscle
43 chr11:8767400-8771800 Weak transcription HSMMtube muscle
44 chr11:8767600-8770200 Weak transcription HUES6 Cell Line embryonic stem cell
45 chr11:8767600-8770600 Enhancers Duodenum Mucosa Duodenum
46 chr11:8767600-8770600 Weak transcription Pancreas Pancrea
47 chr11:8767600-8771000 Enhancers Primary Natural Killer cells fromperipheralblood blood
48 chr11:8767600-8772400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr11:8767600-8772400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr11:8767800-8769600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015