Variant report

Variant	rs7121257
Chromosome Location	chr11:46231502-46231503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10734545	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11038807	0.92[EUR][1000 genomes]
rs11038817	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907002	0.94[ASN][1000 genomes]
rs3901272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7124891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap]
rs7949889	0.94[ASN][1000 genomes]
rs9666935	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46231000-46232200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:46231000-46232200	Enhancers	K562	blood
3	chr11:46231200-46231600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:46231200-46232000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr11:46231400-46231600	Enhancers	Hela-S3	cervix
6	chr11:46231400-46231600	Enhancers	Osteobl	bone
7	chr11:46231400-46232000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:46231400-46232000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:46231400-46232000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:46231400-46232000	Enhancers	NHDF-Ad	bronchial
11	chr11:46231400-46232200	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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