Variant report

Variant	rs7949889
Chromosome Location	chr11:46238567-46238568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10734545	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038817	0.94[ASN][1000 genomes]
rs1565411	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1907002	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863721	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3901272	0.94[ASN][1000 genomes]
rs6485668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121257	0.94[ASN][1000 genomes]
rs7124891	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46237600-46238600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr11:46237800-46238600	Enhancers	Colonic Mucosa	Colon
3	chr11:46238200-46238600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:46238200-46238600	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:46238200-46238800	Enhancers	K562	blood
6	chr11:46238400-46238600	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:46238400-46238600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr11:46238400-46238600	Enhancers	Stomach Mucosa	stomach
9	chr11:46238400-46238600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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