Variant report

Variant	rs7122232
Chromosome Location	chr11:8695990-8695991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:8695985-8696045	GM20000	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:8684147..8686108-chr11:8695746..8698367,2	MCF-7	breast:
2	chr11:8695321..8697391-chr11:8699446..8702262,2	MCF-7	breast:
3	chr11:8693907..8695992-chr11:8931800..8933882,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254900	TF binding region
TRIM66	TF binding region
ENSG00000166452	Chromatin interaction
ENSG00000254900	Chromatin interaction
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11820358	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820360	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825463	0.84[AFR][1000 genomes]
rs7106264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123873	1.00[AMR][1000 genomes]
rs7930642	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7933556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7933614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
2	chr11:8664200-8700400	Weak transcription	Stomach Mucosa	stomach
3	chr11:8684000-8701600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:8684400-8701400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:8689400-8696000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:8690000-8703000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:8690400-8701200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr11:8691200-8696400	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:8692000-8696000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:8693600-8700200	Weak transcription	HepG2	liver
11	chr11:8693600-8703000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:8693600-8703200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:8693600-8703200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:8693600-8703200	Weak transcription	Fetal Lung	lung
15	chr11:8693600-8703400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:8693600-8703400	Weak transcription	Ovary	ovary
17	chr11:8693800-8700200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:8693800-8700200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:8693800-8700400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:8693800-8700400	Weak transcription	Aorta	Aorta
21	chr11:8693800-8700400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:8693800-8700600	Weak transcription	Fetal Thymus	thymus
23	chr11:8693800-8701000	Weak transcription	Gastric	stomach
24	chr11:8693800-8703000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:8693800-8703000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:8693800-8703000	Weak transcription	Hela-S3	cervix
27	chr11:8693800-8703200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:8693800-8703200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:8693800-8703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:8693800-8703200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:8693800-8703200	Weak transcription	Brain Substantia Nigra	brain
32	chr11:8693800-8703200	Weak transcription	Colonic Mucosa	Colon
33	chr11:8693800-8703200	Weak transcription	Fetal Brain Female	brain
34	chr11:8693800-8703400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:8693800-8703400	Weak transcription	Brain Germinal Matrix	brain
36	chr11:8693800-8703600	Weak transcription	Spleen	Spleen
37	chr11:8694000-8696600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:8694000-8697600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:8694000-8697600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:8694000-8697800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:8694000-8698000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr11:8694000-8700000	Weak transcription	Adipose Nuclei	Adipose
43	chr11:8694000-8700200	Weak transcription	Fetal Intestine Large	intestine
44	chr11:8694000-8700400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:8694000-8700400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:8694000-8700400	Weak transcription	Pancreas	Pancrea
47	chr11:8694000-8700400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:8694000-8700600	Weak transcription	Brain Anterior Caudate	brain
49	chr11:8694000-8700600	Weak transcription	Placenta	Placenta
50	chr11:8694000-8700800	Weak transcription	Stomach Smooth Muscle	stomach

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