Variant report

Variant	rs7933556
Chromosome Location	chr11:8685648-8685649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8685343..8687827-chr11:8701286..8704255,3	MCF-7	breast:
2	chr11:8684147..8686108-chr11:8695746..8698367,2	MCF-7	breast:
3	chr11:8685221..8687692-chr11:8688586..8690105,2	K562	blood:
4	chr11:8682997..8685981-chr11:8690631..8692765,2	K562	blood:
5	chr11:8671547..8674880-chr11:8683700..8686434,3	K562	blood:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10840103	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs11820358	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820360	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825463	0.84[AFR][1000 genomes]
rs11825777	0.89[YRI][hapmap]
rs7106264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121168	0.82[ASW][hapmap];0.89[YRI][hapmap]
rs7122232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122365	0.88[YRI][hapmap]
rs7123873	1.00[AMR][1000 genomes]
rs7930642	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7933614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940343	0.88[YRI][hapmap]
rs7940568	0.88[YRI][hapmap]
rs7942340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
2	chr11:8662600-8692000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:8664200-8692800	Weak transcription	K562	blood
4	chr11:8664200-8700400	Weak transcription	Stomach Mucosa	stomach
5	chr11:8665800-8692600	Weak transcription	Fetal Kidney	kidney
6	chr11:8668200-8692400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:8668400-8692400	Weak transcription	A549	lung
8	chr11:8669400-8693000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:8669800-8691800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:8670000-8693400	Weak transcription	Colonic Mucosa	Colon
11	chr11:8670000-8693600	Weak transcription	Psoas Muscle	Psoas
12	chr11:8670200-8692400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:8670200-8692800	Weak transcription	Left Ventricle	heart
14	chr11:8670200-8692800	Weak transcription	Ovary	ovary
15	chr11:8670200-8693200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:8670400-8690400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:8670400-8693200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:8670600-8686400	Weak transcription	HepG2	liver
19	chr11:8670600-8692800	Weak transcription	Primary B cells from cord blood	blood
20	chr11:8671200-8691200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:8671200-8693200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:8671400-8692400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:8671600-8690400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:8671600-8690400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:8671600-8692400	Weak transcription	Fetal Thymus	thymus
26	chr11:8671600-8692600	Weak transcription	Fetal Stomach	stomach
27	chr11:8671600-8692600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:8671600-8692600	Weak transcription	Hela-S3	cervix
29	chr11:8671600-8692800	Weak transcription	Lung	lung
30	chr11:8671600-8693200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr11:8671600-8693400	Weak transcription	Gastric	stomach
32	chr11:8672000-8692800	Weak transcription	Spleen	Spleen
33	chr11:8672200-8692800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:8672400-8691800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:8672400-8692600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:8672600-8688800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr11:8672600-8690400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:8672600-8692400	Weak transcription	Thymus	Thymus
39	chr11:8672600-8693200	Weak transcription	Esophagus	oesophagus
40	chr11:8672800-8689000	Weak transcription	Placenta	Placenta
41	chr11:8673400-8686400	Weak transcription	Dnd41	blood
42	chr11:8673800-8689800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr11:8673800-8692400	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:8673800-8692800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:8673800-8693400	Weak transcription	Aorta	Aorta
46	chr11:8674200-8692400	Weak transcription	HSMMtube	muscle
47	chr11:8674400-8688200	Weak transcription	NHEK	skin
48	chr11:8674400-8690400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:8674400-8690600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:8674400-8691200	Weak transcription	HMEC	breast

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