Variant report

Variant	rs7940568
Chromosome Location	chr11:8497734-8497735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr11:8497639-8497876	H1-hESC	embryonic stem cell:	n/a	n/a
2	USF1	chr11:8497547-8497869	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:8497733-8497783	LNCaP	prostate:	n/a
2	chr11:8497733-8497783	MCF-7	breast:	n/a
3	chr11:8497733-8497783	MCF10A-Er-Src	breast:	n/a
4	chr11:8497733-8497783	HRPEpiC	eye:	n/a
5	chr11:8497733-8497783	HUVEC	blood vessel:	n/a
6	chr11:8497733-8497783	ovcar-3	ovarian:	n/a
7	chr11:8497733-8497783	HCM	heart:	n/a
8	chr11:8497733-8497783	HPAEpiC	pulmonary alveolar:	n/a
9	chr11:8497733-8497783	GM19239	blood:	n/a
10	chr11:8497733-8497783	NB4	blood:	n/a
11	chr11:8497733-8497783	U87	brain:	n/a
12	chr11:8497733-8497783	Jurkat	blood:	n/a
13	chr11:8497733-8497783	BJ	skin:	n/a
14	chr11:8497733-8497783	Hela-S3	cervix:	n/a
15	chr11:8497733-8497783	SAEC	small airway:	n/a
16	chr11:8497733-8497783	HNPCEpiC	eye:	n/a
17	chr11:8497733-8497783	ProgFib	skin:	n/a
18	chr11:8497733-8497783	IMR90	lung:	fetal
19	chr11:8497733-8497783	PrEC	prostate:	n/a
20	chr11:8497733-8497783	HEEpiC	esophagus:	n/a
21	chr11:8497733-8497783	HRCEpiC	kidney:	n/a
22	chr11:8497733-8497783	NT2-D1	testis:	n/a
23	chr11:8497733-8497783	CMK	blood:	n/a
24	chr11:8497733-8497783	AG09309	skin:	n/a
25	chr11:8497733-8497783	HCPEpiC	choroid plexus:	n/a
26	chr11:8497733-8497783	HIPEpiC	eye:	n/a
27	chr11:8497733-8497783	H1-hESC	embryonic stem cell:	embryo
28	chr11:8497733-8497783	NHDF-neo	bronchial:	n/a
29	chr11:8497733-8497783	K562	blood:	n/a
30	chr11:8497733-8497783	AG09319	gingival:	n/a
31	chr11:8497733-8497783	AG10803	skin:	n/a
32	chr11:8497733-8497783	GM12891	blood:	n/a
33	chr11:8497733-8497783	T-47D	breast:	n/a
34	chr11:8497733-8497783	HCT-116	colon:	n/a
35	chr11:8497733-8497783	RPTEC	kidney:	n/a
36	chr11:8497733-8497783	HCF	heart:	n/a
37	chr11:8497733-8497783	BE2_C	brain:	n/a
38	chr11:8497733-8497783	PFSK-1	brain:	n/a
39	chr11:8497733-8497783	SK-N-MC	brain:	n/a
40	chr11:8497733-8497783	HAEpiC	amniotic membrane:	n/a
41	chr11:8497733-8497783	HL-60	blood:	n/a
42	chr11:8497733-8497783	GM12892	blood:	n/a
43	chr11:8497733-8497783	SKMC	muscle:	n/a
44	chr11:8497733-8497783	A549	lung:	n/a
45	chr11:8497733-8497783	AoSMC	blood vessel:	n/a
46	chr11:8497733-8497783	SK-N-SH	brain:	n/a
47	chr11:8497733-8497783	AG04449	skin:	fetal
48	chr11:8497733-8497783	HMEC	breast:	n/a
49	chr11:8497733-8497783	HepG2	liver:	n/a
50	chr11:8497733-8497783	Caco-2	colon:	n/a

No data

Variant related genes	Relation type
STK33	TF binding region
STK33	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10840103	0.88[YRI][hapmap]
rs16938248	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs7112416	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122365	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7933556	0.88[YRI][hapmap]
rs7935263	1.00[AFR][1000 genomes]
rs7937850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940343	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7950679	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9736792	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8492200-8499400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:8497000-8498000	Weak transcription	Gastric	stomach
3	chr11:8497600-8498200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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