Variant report

Variant	rs7122660
Chromosome Location	chr11:121262795-121262796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10892748	1.00[AMR][1000 genomes]
rs2370386	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59836128	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7129425	0.84[EUR][1000 genomes]
rs7131426	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73594753	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73594788	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73594790	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73594792	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73594799	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948862	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121251200-121264800	Weak transcription	Primary T cells from cord blood	blood
2	chr11:121255200-121264200	Weak transcription	Right Ventricle	heart
3	chr11:121260600-121265200	Weak transcription	Psoas Muscle	Psoas
4	chr11:121260800-121265600	Weak transcription	Lung	lung
5	chr11:121261000-121265800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:121261000-121277000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:121261200-121265600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:121261400-121262800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:121262000-121263000	Weak transcription	Fetal Brain Female	brain
10	chr11:121262200-121263000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:121262200-121263000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:121262200-121263200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:121262200-121265000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:121262200-121265200	Enhancers	Fetal Intestine Small	intestine
15	chr11:121262400-121263000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:121262400-121263000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:121262400-121263000	Enhancers	Esophagus	oesophagus
18	chr11:121262400-121263000	Enhancers	Gastric	stomach
19	chr11:121262400-121263000	Enhancers	HMEC	breast
20	chr11:121262400-121263000	Enhancers	NHEK	skin
21	chr11:121262400-121264600	Enhancers	Stomach Mucosa	stomach
22	chr11:121262400-121265000	Enhancers	Duodenum Mucosa	Duodenum
23	chr11:121262400-121265000	Enhancers	Fetal Intestine Large	intestine
24	chr11:121262400-121265000	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr11:121262600-121262800	Enhancers	Primary hematopoietic stem cells	blood
26	chr11:121262600-121262800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr11:121262600-121264200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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