The 2.0 version of rSNPBase

Variant report

Variant rs712593
Chromosome Location chr5:115657397-115657398
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115634200-115664400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr5:115640800-115658200 Weak transcription Colonic Mucosa Colon
3 chr5:115643200-115660200 Weak transcription Placenta Placenta
4 chr5:115643200-115664200 Weak transcription Thymus Thymus
5 chr5:115643200-115664800 Weak transcription Pancreas Pancrea
6 chr5:115643200-115669800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr5:115644000-115658600 Weak transcription HSMM muscle
8 chr5:115644400-115664800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr5:115644400-115671800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr5:115647600-115660400 Weak transcription Small Intestine intestine
11 chr5:115649000-115692800 Weak transcription Fetal Heart heart
12 chr5:115649200-115663200 Weak transcription HSMMtube muscle
13 chr5:115649600-115658000 Strong transcription Primary T helper cells PMA-I stimulated --
14 chr5:115650800-115659200 Strong transcription Monocytes-CD14+_RO01746 blood
15 chr5:115652000-115665000 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr5:115652000-115668000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr5:115652800-115659400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr5:115653000-115667400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr5:115653200-115658800 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr5:115653200-115659200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr5:115653400-115658200 Weak transcription Esophagus oesophagus
22 chr5:115653400-115658400 Strong transcription Primary monocytes fromperipheralblood blood
23 chr5:115653400-115664600 Weak transcription Psoas Muscle Psoas
24 chr5:115653600-115657800 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr5:115653600-115658400 Strong transcription Primary T helper naive cells fromperipheralblood blood
26 chr5:115653600-115659200 Weak transcription Aorta Aorta
27 chr5:115653600-115660000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr5:115653600-115670400 Weak transcription Right Ventricle heart
29 chr5:115654000-115658600 Strong transcription Fetal Intestine Large intestine
30 chr5:115654400-115657800 Strong transcription Primary B cells from peripheral blood blood
31 chr5:115654400-115658400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr5:115654400-115658600 Weak transcription Dnd41 blood
33 chr5:115654400-115661000 Weak transcription Brain Inferior Temporal Lobe brain
34 chr5:115654400-115664600 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr5:115654600-115664400 Weak transcription Fetal Muscle Trunk muscle
36 chr5:115654600-115664400 Weak transcription Stomach Smooth Muscle stomach
37 chr5:115654600-115664800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr5:115654600-115665000 Weak transcription Rectal Smooth Muscle rectum
39 chr5:115654600-115669600 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr5:115654800-115658400 Weak transcription Fetal Muscle Leg muscle
41 chr5:115654800-115658600 Weak transcription Duodenum Mucosa Duodenum
42 chr5:115655000-115660000 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr5:115655200-115657600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr5:115655200-115658000 Strong transcription Primary B cells from cord blood blood
45 chr5:115655200-115658600 Weak transcription Brain Hippocampus Middle brain
46 chr5:115655200-115659800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr5:115655200-115663800 Weak transcription Rectal Mucosa Donor 31 rectum
48 chr5:115655200-115664400 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr5:115655400-115657800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr5:115655400-115658000 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015