Variant report

Variant	rs7128336
Chromosome Location	chr11:36058661-36058662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35852353..35854409-chr11:36056602..36059276,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12270867	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272412	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358987	1.00[JPT][hapmap]
rs2281694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262450	0.90[JPT][hapmap]
rs57144163	0.88[EUR][1000 genomes]
rs7927259	1.00[JPT][hapmap]
rs995328	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36045000-36059800	Weak transcription	Fetal Kidney	kidney
2	chr11:36046600-36059000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:36050000-36065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:36052200-36069200	Weak transcription	Psoas Muscle	Psoas
6	chr11:36053200-36059800	Weak transcription	Fetal Lung	lung
7	chr11:36053600-36069600	Weak transcription	Brain Angular Gyrus	brain
8	chr11:36053800-36061400	Weak transcription	Fetal Brain Male	brain
9	chr11:36054400-36059000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:36055000-36059400	Enhancers	Fetal Heart	heart
11	chr11:36055200-36059400	Enhancers	HMEC	breast
12	chr11:36055400-36068200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:36055800-36061200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:36055800-36070200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:36055800-36070400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:36055800-36072600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:36056000-36063400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:36056000-36065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:36056200-36063600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:36056200-36066800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:36056200-36070200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:36056800-36059000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr11:36056800-36059400	Enhancers	Pancreas	Pancrea
24	chr11:36056800-36063000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:36056800-36063200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:36057000-36059000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:36057000-36060400	Enhancers	Ovary	ovary
28	chr11:36057200-36058800	Weak transcription	A549	lung
29	chr11:36057200-36059800	Strong transcription	Fetal Intestine Small	intestine
30	chr11:36057200-36069200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:36057400-36059400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:36057400-36060200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:36057400-36060600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
34	chr11:36057400-36061800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:36057400-36070000	Weak transcription	Fetal Intestine Large	intestine
36	chr11:36057400-36073800	Weak transcription	Hela-S3	cervix
37	chr11:36057600-36058800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:36057600-36058800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:36057600-36058800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:36057600-36058800	Genic enhancers	Esophagus	oesophagus
41	chr11:36057600-36059400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:36057600-36059400	Enhancers	Brain Hippocampus Middle	brain
43	chr11:36057600-36059800	Genic enhancers	Fetal Muscle Trunk	muscle
44	chr11:36057600-36060000	Enhancers	Brain Germinal Matrix	brain
45	chr11:36057600-36060200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:36057600-36060200	Enhancers	Brain Substantia Nigra	brain
47	chr11:36057600-36060400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:36057800-36058800	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr11:36057800-36058800	Genic enhancers	Fetal Brain Female	brain
50	chr11:36057800-36059000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links