Variant report

Variant	rs1358987
Chromosome Location	chr11:36041614-36041615
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C11orf55-5	chr11:36041412-36045387	ucscGeneNc_uc001mwl_2

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1358986	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs262425	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs262429	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs262432	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs262450	0.90[JPT][hapmap]
rs4547071	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57144163	0.99[ASN][1000 genomes]
rs58189852	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58230129	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60312060	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879138	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879139	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879140	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61879141	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61879142	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7118616	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128336	1.00[JPT][hapmap]
rs7927137	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927259	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs995328	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv554002	chr11:36025118-36052212	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36027600-36051600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:36031000-36046000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:36031200-36044200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:36031400-36052000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:36032400-36044600	Weak transcription	Fetal Brain Female	brain
6	chr11:36032400-36045600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:36037200-36049000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:36037600-36044600	Weak transcription	Fetal Kidney	kidney
9	chr11:36037800-36044400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:36037800-36045400	Weak transcription	Fetal Heart	heart
11	chr11:36037800-36046200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:36037800-36051800	Weak transcription	Fetal Brain Male	brain
13	chr11:36038600-36045400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:36038800-36044200	Weak transcription	Fetal Stomach	stomach
15	chr11:36039400-36041800	Enhancers	Brain Substantia Nigra	brain
16	chr11:36039400-36042400	Enhancers	HMEC	breast
17	chr11:36039600-36041800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:36039600-36042200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:36039800-36044400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:36040600-36042800	Enhancers	HSMMtube	muscle
21	chr11:36040800-36042200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:36040800-36042400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:36040800-36043000	Enhancers	Ovary	ovary
24	chr11:36041000-36041800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:36041000-36041800	Enhancers	HSMM	muscle
26	chr11:36041000-36044200	Weak transcription	Fetal Lung	lung
27	chr11:36041000-36045400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:36041200-36041800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:36041200-36041800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:36041200-36042600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:36041200-36045000	Weak transcription	Brain Anterior Caudate	brain
32	chr11:36041200-36051600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:36041400-36044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:36041400-36044400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:36041400-36044400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:36041400-36044800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:36041400-36046000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:36041400-36048000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:36041600-36042200	Weak transcription	Esophagus	oesophagus
40	chr11:36041600-36042600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:36041600-36042600	Enhancers	NHEK	skin
42	chr11:36041600-36042800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:36041600-36043000	Weak transcription	Pancreas	Pancrea
44	chr11:36041600-36043400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:36041600-36044200	Weak transcription	Brain Germinal Matrix	brain
46	chr11:36041600-36044800	Weak transcription	Fetal Muscle Leg	muscle
47	chr11:36041600-36045200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:36041600-36045200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:36041600-36045400	Weak transcription	NHDF-Ad	bronchial
50	chr11:36041600-36045800	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links